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Cow genome map

           
Conread name:
           
Ss1.1-Pig2-104J14.5
        

               
Conread position:
               
1-106
               

               
Cow position:
               
chr13:607228-607120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-111
               

               
Cow position:
               
chr13:24753922-24754033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr13:20041927-20041805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr13:24230249-24230368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
65, 117
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr13:2414068-2414190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr13:48597949-48598068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr13:52749438-52749323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr13:21904703-21904827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr13:5758301-5758178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr13:22025669-22025542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr13:15192850-15192720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 59
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr13:53195251-53195118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
20, 16
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr13:48372874-48372729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
88, 22
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr13:54093784-54093972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
88, 76
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr13:16024630-16024832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr13:19178314-19178528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr13:43629737-43629528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr13:48251946-48251740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
60, 91
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr13:20649944-20649727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr13:11260310-11260516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr13:15869162-15869383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 57
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr13:20570764-20570989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr13:4420384-4420575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
61, 117
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr13:21275897-21276120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr13:45353083-45353307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:4552843-4553067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:12875931-12875717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:16247697-16247920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
82, 198
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:25435080-25434861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
89, 65
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:25531748-25531522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:34375307-34375523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:36771380-36771154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
87, 114
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:37517097-37516866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:45725935-45726147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:51940776-51940997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr13:60430035-60429811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr13:13265848-13266069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr13:20378296-20378072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr13:18243901-18244139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 210
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr13:23270172-23269915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
88, 251
               

               
Conread position:
               
2-117
               

               
Cow position:
               
chr13:563102-562986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
85, 58
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr13:20536541-20536664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
58, 118
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr13:58743248-58743125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
2-160
               

               
Cow position:
               
chr13:19188341-19188504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 151
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chr13:41154991-41154808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 58
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr13:43762211-43762420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
2-200
               

               
Cow position:
               
chr13:37980597-37980389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 71
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr13:13765826-13766031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr13:60974123-60974340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr13:20174789-20175007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr13:60690686-60690451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 198
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr13:5752385-5752151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-119
               

               
Cow position:
               
chr13:18491644-18491759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr13:15974654-15974858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr13:25261768-25261553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr13:52585979-52585777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 51
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr13:41806818-41807043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 62
               

               
Conread position:
               
6-178
               

               
Cow position:
               
chr13:37979127-37978960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
142, 45
               

               
Conread position:
               
6-205
               

               
Cow position:
               
chr13:20682989-20683214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
6-221
               

               
Cow position:
               
chr13:18166778-18167014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
11-200
               

               
Cow position:
               
chr13:37947953-37947753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
11-203
               

               
Cow position:
               
chr13:16834025-16833825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
22-205
               

               
Cow position:
               
chr13:20440526-20440333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
27-205
               

               
Cow position:
               
chr13:9142356-9142550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
164-504
               

               
Cow position:
               
chr13:18243773-18244094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
183-504
               

               
Cow position:
               
chr13:19178196-19178514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
216-504
               

               
Cow position:
               
chr13:18166686-18166968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
217-504
               

               
Cow position:
               
chr13:48037571-48037858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
218-504
               

               
Cow position:
               
chr13:20562945-20563236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 189
               

               
Conread position:
               
225-504
               

               
Cow position:
               
chr13:1043006-1042718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
229-504
               

               
Cow position:
               
chr13:60974045-60974313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
6, 13
               

               
Conread position:
               
235-499
               

               
Cow position:
               
chr13:15041502-15041239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
240-501
               

               
Cow position:
               
chr13:42113994-42114256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
250-504
               

               
Cow position:
               
chr13:6616769-6616510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
251-485
               

               
Cow position:
               
chr13:6975809-6975571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
6, 106
               

               
Conread position:
               
251-504
               

               
Cow position:
               
chr13:20879838-20879597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
104, 73
               

               
Conread position:
               
254-504
               

               
Cow position:
               
chr13:54702176-54702428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
259-504
               

               
Cow position:
               
chr13:21275854-21276093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
260-504
               

               
Cow position:
               
chr13:23856206-23856453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 112
               

               
Conread position:
               
267-467
               

               
Cow position:
               
chr13:19022276-19022479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chr13:23270208-23269975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
41, 127
               

               
Conread position:
               
268-504
               

               
Cow position:
               
chr13:12448992-12448752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 208
               

               
Conread position:
               
268-504
               

               
Cow position:
               
chr13:37517134-37516898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 136
               

               
Conread position:
               
269-504
               

               
Cow position:
               
chr13:24376499-24376728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chr13:15869128-15869357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chr13:20041961-20041719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chr13:20666383-20666150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
271-495
               

               
Cow position:
               
chr13:20649978-20649754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
39, 137
               

               
Conread position:
               
271-504
               

               
Cow position:
               
chr13:20814280-20814042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
271-504
               

               
Cow position:
               
chr13:20816313-20816551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
272-501
               

               
Cow position:
               
chr13:60690720-60690484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
38, 232
               

               
Conread position:
               
272-504
               

               
Cow position:
               
chr13:15172403-15172169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
274-498
               

               
Cow position:
               
chr13:54093752-54093972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 109
               

               
Conread position:
               
274-501
               

               
Cow position:
               
chr13:17613353-17613581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
274-501
               

               
Cow position:
               
chr13:28683373-28683593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
275-498
               

               
Cow position:
               
chr13:5752417-5752191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 131
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr13:8607510-8607281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr13:17622295-17622522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr13:43194187-43194413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
276-458
               

               
Cow position:
               
chr13:5079211-5079033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
277-457
               

               
Cow position:
               
chr13:15991219-15991031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
277-504
               

               
Cow position:
               
chr13:32949995-32949765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
278-504
               

               
Cow position:
               
chr13:42860559-42860332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
283-501
               

               
Cow position:
               
chr13:5279169-5278953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr13:6060989-6060770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 84
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr13:14544135-14544360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
286-504
               

               
Cow position:
               
chr13:34507897-34508114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 43
               

               
Conread position:
               
287-504
               

               
Cow position:
               
chr13:33875688-33875900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
289-500
               

               
Cow position:
               
chr13:45604391-45604184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
297-501
               

               
Cow position:
               
chr13:16292574-16292781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
298-453
               

               
Cow position:
               
chr13:2404772-2404930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 72
               

               
Conread position:
               
298-485
               

               
Cow position:
               
chr13:20839596-20839786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
298-486
               

               
Cow position:
               
chr13:21904696-21904882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 123
               

               
Conread position:
               
298-487
               

               
Cow position:
               
chr13:46181824-46182009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
298-493
               

               
Cow position:
               
chr13:25531755-25531561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
12, 72
               

               
Conread position:
               
298-498
               

               
Cow position:
               
chr13:43184839-43184640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 83
               

               
Conread position:
               
298-501
               

               
Cow position:
               
chr13:13501589-13501387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
298-501
               

               
Cow position:
               
chr13:17855406-17855609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
298-501
               

               
Cow position:
               
chr13:34556304-34556097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 112
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:3315645-3315435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
12, 84
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:6606990-6606782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 106
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:6945400-6945611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:20784627-20784826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:24586076-24586285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:25261777-25261569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:25926826-25927030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
57, 104
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:37484239-37484032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
13, 70
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:42200652-42200856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:53566628-53566834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr13:55295590-55295388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
299-490
               

               
Cow position:
               
chr13:4464044-4464231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
301-504
               

               
Cow position:
               
chr13:27027734-27027531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
302-504
               

               
Cow position:
               
chr13:24753919-24754122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
8, 120
               

               
Conread position:
               
303-504
               

               
Cow position:
               
chr13:44322940-44323141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 111
               

               
Conread position:
               
304-504
               

               
Cow position:
               
chr13:15884978-15884776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 63
               

               
Conread position:
               
305-495
               

               
Cow position:
               
chr13:43480100-43480290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
305-497
               

               
Cow position:
               
chr13:11955067-11954883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
305-501
               

               
Cow position:
               
chr13:21209904-21210098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
306-493
               

               
Cow position:
               
chr13:14927279-14927466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
306-504
               

               
Cow position:
               
chr13:26383196-26382993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
306-504
               

               
Cow position:
               
chr13:33517879-33517686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
306-504
               

               
Cow position:
               
chr13:38278092-38277899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
306-504
               

               
Cow position:
               
chr13:40722664-40722472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 48
               

               
Conread position:
               
307-471
               

               
Cow position:
               
chr13:61990292-61990129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 76
               

               
Conread position:
               
307-480
               

               
Cow position:
               
chr13:11147347-11147520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
307-480
               

               
Cow position:
               
chr13:40943289-40943462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
307-486
               

               
Cow position:
               
chr13:563098-562918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
51, 44
               

               
Conread position:
               
307-486
               

               
Cow position:
               
chr13:10845640-10845813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
307-486
               

               
Cow position:
               
chr13:51821845-51821673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
307-491
               

               
Cow position:
               
chr13:17800118-17800297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
307-491
               

               
Cow position:
               
chr13:33054350-33054170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
307-494
               

               
Cow position:
               
chr13:54344815-54345005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
307-495
               

               
Cow position:
               
chr13:11096219-11096401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
307-497
               

               
Cow position:
               
chr13:34281721-34281911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
307-498
               

               
Cow position:
               
chr13:26261754-26261562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
307-498
               

               
Cow position:
               
chr13:27525220-27525030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
307-500
               

               
Cow position:
               
chr13:6079374-6079185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-500
               

               
Cow position:
               
chr13:24369627-24369819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr13:7076303-7076491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr13:17815813-17816006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr13:56686479-56686662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
307-502
               

               
Cow position:
               
chr13:18551489-18551684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
307-502
               

               
Cow position:
               
chr13:21155448-21155253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-503
               

               
Cow position:
               
chr13:1779872-1780071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 99
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:311475-311668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 44
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:971848-971660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:3003486-3003685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:12614300-12614498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:13261049-13261246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:13306140-13306344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:21235641-21235447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:24539536-24539733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
52, 177
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:32017481-32017285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:35659798-35659991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:37985714-37985513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 181
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:38012400-38012599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:38329671-38329868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:45023167-45022970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:45353088-45353280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 88
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:47756414-47756613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:52284853-52285053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:55674164-55673967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr13:60430030-60429841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
308-504
               

               
Cow position:
               
chr13:2884095-2884291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
308-504
               

               
Cow position:
               
chr13:15740109-15740304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 161
               

               
Conread position:
               
310-499
               

               
Cow position:
               
chr13:25062456-25062643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
310-501
               

               
Cow position:
               
chr13:19882987-19882801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chr13:61976917-61976727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
45, 57
               

               
Conread position:
               
313-501
               

               
Cow position:
               
chr13:38283935-38283749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
314-504
               

               
Cow position:
               
chr13:23960761-23960568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 38
               

               
Conread position:
               
314-504
               

               
Cow position:
               
chr13:56148585-56148777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
16, 159
               

               
Conread position:
               
314-504
               

               
Cow position:
               
chr13:56160382-56160190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
16, 159
               

               
Conread position:
               
315-502
               

               
Cow position:
               
chr13:4037932-4038116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
316-504
               

               
Cow position:
               
chr13:61170667-61170478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 169
               

               
Conread position:
               
330-504
               

               
Cow position:
               
chr13:8362688-8362508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
330-504
               

               
Cow position:
               
chr13:20606052-20605881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
332-504
               

               
Cow position:
               
chr13:12925859-12926028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
359-504
               

               
Cow position:
               
chr13:25453263-25453408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.