Cow genome map
| Conread name: | Ss1.1-Pig2-104J14.5 |
| Conread position: | 1-106 |
| Cow position: | chr26:19774339-19774445 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-111 |
| Cow position: | chr26:34256264-34256154 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-117 |
| Cow position: | chr26:6252814-6252696 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 88, 108 |
| Conread position: | 1-144 |
| Cow position: | chr26:586914-587055 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 136, 14 |
| Conread position: | 1-178 |
| Cow position: | chr26:9850137-9850331 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-178 |
| Cow position: | chr26:9853647-9853841 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-185 |
| Cow position: | chr26:21992065-21991871 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-188 |
| Cow position: | chr26:8811092-8810884 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 58 |
| Conread position: | 1-188 |
| Cow position: | chr26:10767949-10768151 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 88, 59 |
| Conread position: | 1-188 |
| Cow position: | chr26:13706042-13706245 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 88, 65 |
| Conread position: | 1-190 |
| Cow position: | chr26:27594594-27594393 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 88, 150 |
| Conread position: | 1-192 |
| Cow position: | chr26:29333053-29332848 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 1-199 |
| Cow position: | chr26:32026404-32026619 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-200 |
| Cow position: | chr26:20260542-20260329 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-200 |
| Cow position: | chr26:35449022-35448823 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 88, 57 |
| Conread position: | 1-201 |
| Cow position: | chr26:16549947-16549719 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 82, 59 |
| Conread position: | 1-205 |
| Cow position: | chr26:2531218-2531440 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 86, 103 |
| Conread position: | 1-216 |
| Cow position: | chr26:33567083-33567318 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 76 |
| Conread position: | 1-223 |
| Cow position: | chr26:23926024-23926258 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 116, 65 |
| Conread position: | 2-116 |
| Cow position: | chr26:22354375-22354259 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 87, 112 |
| Conread position: | 2-126 |
| Cow position: | chr26:30568696-30568821 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 58 |
| Conread position: | 2-200 |
| Cow position: | chr26:32013589-32013370 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 74, 64 |
| Conread position: | 2-203 |
| Cow position: | chr26:9099803-9100014 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 3-200 |
| Cow position: | chr26:12155157-12155371 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 3-205 |
| Cow position: | chr26:32776547-32776772 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 4-116 |
| Cow position: | chr26:27761689-27761803 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 81, 112 |
| Conread position: | 5-188 |
| Cow position: | chr26:34108721-34108523 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 96, 55 |
| Conread position: | 15-205 |
| Cow position: | chr26:20256790-20256579 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 28-205 |
| Cow position: | chr26:26670811-26671008 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 39-200 |
| Cow position: | chr26:13774409-13774239 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 75 |
| Conread position: | 165-456 |
| Cow position: | chr26:6252947-6252659 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 165-504 |
| Cow position: | chr26:16550078-16549744 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 216-460 |
| Cow position: | chr26:10764260-10764027 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 267-504 |
| Cow position: | chr26:3071966-3072199 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 269-487 |
| Cow position: | chr26:15200518-15200736 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 270-501 |
| Cow position: | chr26:23925989-23926211 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 270-504 |
| Cow position: | chr26:7642577-7642813 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 274-504 |
| Cow position: | chr26:4585215-4585446 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 36, 79 |
| Conread position: | 274-504 |
| Cow position: | chr26:6447607-6447843 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 11, 222 |
| Conread position: | 274-504 |
| Cow position: | chr26:16166923-16167149 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 275-504 |
| Cow position: | chr26:8811122-8810896 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 128 |
| Conread position: | 276-504 |
| Cow position: | chr26:14174294-14174060 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 277-504 |
| Cow position: | chr26:13270683-13270914 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 286-498 |
| Cow position: | chr26:11263623-11263407 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 286-504 |
| Cow position: | chr26:9104300-9104517 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 286-504 |
| Cow position: | chr26:13021164-13021385 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 286-504 |
| Cow position: | chr26:30806524-30806748 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 288-504 |
| Cow position: | chr26:30034427-30034641 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 289-498 |
| Cow position: | chr26:25394009-25393800 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 21, 81 |
| Conread position: | 296-451 |
| Cow position: | chr26:27761680-27761832 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 105 |
| Conread position: | 298-498 |
| Cow position: | chr26:8352931-8352729 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 298-498 |
| Cow position: | chr26:26888164-26888364 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 298-498 |
| Cow position: | chr26:27491532-27491733 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 298-501 |
| Cow position: | chr26:6794116-6793907 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 298-501 |
| Cow position: | chr26:11134726-11134929 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 298-504 |
| Cow position: | chr26:21351658-21351452 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 298-504 |
| Cow position: | chr26:28442040-28442241 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 298-504 |
| Cow position: | chr26:32897902-32898107 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 298-504 |
| Cow position: | chr26:34108728-34108535 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 299-504 |
| Cow position: | chr26:6498227-6498020 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 302-504 |
| Cow position: | chr26:16796267-16796468 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 306-495 |
| Cow position: | chr26:33744851-33744662 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 307-477 |
| Cow position: | chr26:25526204-25526037 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 51, 47 |
| Conread position: | 307-496 |
| Cow position: | chr26:19774344-19774531 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 83 |
| Conread position: | 307-504 |
| Cow position: | chr26:3181988-3182185 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 307-504 |
| Cow position: | chr26:6793900-6793705 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 63, 47 |
| Conread position: | 307-504 |
| Cow position: | chr26:6828127-6827930 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 307-504 |
| Cow position: | chr26:14958056-14958250 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 163 |
| Conread position: | 307-504 |
| Cow position: | chr26:18918119-18918306 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 307-504 |
| Cow position: | chr26:19769127-19769321 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 110, 37 |
| Conread position: | 307-504 |
| Cow position: | chr26:21243059-21242868 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 307-504 |
| Cow position: | chr26:31701779-31701579 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 307-504 |
| Cow position: | chr26:32013585-32013394 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 52, 47 |
| Conread position: | 309-504 |
| Cow position: | chr26:32683074-32682878 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 103 |
| Conread position: | 316-495 |
| Cow position: | chr26:7525520-7525695 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 350-500 |
| Cow position: | chr26:7148381-7148530 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 361-504 |
| Cow position: | chr26:22180407-22180264 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 368-504 |
| Cow position: | chr26:3706700-3706564 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 370-504 |
| Cow position: | chr26:15857574-15857440 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.