Cow genome map

Conread name: Ss1.1-Pig2-104J14.5

Conread position: 1-106
Cow position: chr29:3100313-3100419 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 1-117
Cow position: chr29:22778233-22778351 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 113

Conread position: 1-119
Cow position: chr29:4334670-4334547 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 106
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 88, 12

Conread position: 1-156
Cow position: chr29:1395538-1395376 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 100, 12

Conread position: 1-166
Cow position: chr29:16309686-16309510 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 107, 65

Conread position: 1-190
Cow position: chr29:6217604-6217816 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 93, 76

Conread position: 1-190
Cow position: chr29:12784012-12784222 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 87, 201

Conread position: 1-200
Cow position: chr29:19125287-19125082 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 89, 65

Conread position: 1-200
Cow position: chr29:32799764-32799985 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 66, 0

Conread position: 1-201
Cow position: chr29:6293530-6293746 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 67, 0

Conread position: 1-203
Cow position: chr29:87072-87298 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 177
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 59, 163

Conread position: 1-203
Cow position: chr29:12798863-12798651 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 121, 65

Conread position: 1-205
Cow position: chr29:6636043-6635820 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 34, 74

Conread position: 1-205
Cow position: chr29:13127178-13127394 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 65

Conread position: 1-205
Cow position: chr29:34745717-34745938 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 96, 65

Conread position: 1-205
Cow position: chr29:35292032-35291815 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 88, 32

Conread position: 1-205
Cow position: chr29:44901760-44901986 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 1-206
Cow position: chr29:26771378-26771156 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 88, 54

Conread position: 2-87
Cow position: chr29:7109176-7109089 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 2-106
Cow position: chr29:40891753-40891861 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 2-111
Cow position: chr29:4520278-4520167 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 87, 58

Conread position: 2-116
Cow position: chr29:41365055-41364937 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 2-186
Cow position: chr29:29769408-29769610 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 87, 64

Conread position: 3-199
Cow position: chr29:3396048-3395833 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 86, 57

Conread position: 3-203
Cow position: chr29:35281439-35281222 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 3-205
Cow position: chr29:6925954-6925738 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 121, 63

Conread position: 3-222
Cow position: chr29:40337587-40337825 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 86, 23

Conread position: 6-221
Cow position: chr29:10156366-10156589 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 97, 60

Conread position: 7-201
Cow position: chr29:21529224-21529020 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 56, 26

Conread position: 8-119
Cow position: chr29:28979544-28979660 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 8-219
Cow position: chr29:34359867-34360091 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 81, 19

Conread position: 11-111
Cow position: chr29:37599273-37599373 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 23-205
Cow position: chr29:9333052-9332860 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 45, 84

Conread position: 34-191
Cow position: chr29:30367124-30367292 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 63, 32

Conread position: 149-501
Cow position: chr29:21237232-21236865 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 249
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 54, 167

Conread position: 208-500
Cow position: chr29:11915859-11915567 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 193
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 15

Conread position: 228-490
Cow position: chr29:17668510-17668255 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 5

Conread position: 228-504
Cow position: chr29:15940613-15940892 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 189
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 32, 12

Conread position: 249-504
Cow position: chr29:3396107-3395856 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 109

Conread position: 254-504
Cow position: chr29:35281491-35281249 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 26, 39

Conread position: 266-504
Cow position: chr29:26017521-26017765 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 167
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 42, 204

Conread position: 267-504
Cow position: chr29:17222395-17222154 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 43, 90

Conread position: 271-496
Cow position: chr29:20903310-20903534 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 39, 15

Conread position: 271-504
Cow position: chr29:2984866-2984633 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 136

Conread position: 271-504
Cow position: chr29:37785197-37785433 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 86, 21

Conread position: 272-501
Cow position: chr29:2744295-2744523 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 156
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 38, 83

Conread position: 273-504
Cow position: chr29:6844654-6844883 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 13

Conread position: 275-486
Cow position: chr29:4520310-4520099 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 96

Conread position: 275-501
Cow position: chr29:1556904-1556681 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 71

Conread position: 275-501
Cow position: chr29:20933677-20933454 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 80, 17

Conread position: 277-504
Cow position: chr29:15944546-15944315 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 130

Conread position: 282-498
Cow position: chr29:36217082-36216870 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 86

Conread position: 283-501
Cow position: chr29:16757024-16756804 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 148
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 26, 203

Conread position: 283-504
Cow position: chr29:9686036-9686255 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 120

Conread position: 286-500
Cow position: chr29:35738308-35738520 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 73, 40

Conread position: 287-504
Cow position: chr29:13615675-13615897 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 70

Conread position: 289-504
Cow position: chr29:4625037-4625247 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 65

Conread position: 289-504
Cow position: chr29:19762231-19762018 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 26

Conread position: 289-504
Cow position: chr29:26130743-26130529 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 148
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 57

Conread position: 289-504
Cow position: chr29:39111355-39111562 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 81

Conread position: 292-486
Cow position: chr29:22714766-22714964 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 64

Conread position: 294-504
Cow position: chr29:12680113-12679901 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 146
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 14, 79

Conread position: 298-497
Cow position: chr29:39567638-39567441 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 59

Conread position: 298-504
Cow position: chr29:17160-17359 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 16

Conread position: 298-504
Cow position: chr29:87065-87271 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 12, 174

Conread position: 298-504
Cow position: chr29:19338938-19338725 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 298-504
Cow position: chr29:28868586-28868377 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 14, 71

Conread position: 299-504
Cow position: chr29:36530815-36530609 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 60

Conread position: 300-504
Cow position: chr29:25088699-25088499 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 11, 45

Conread position: 307-494
Cow position: chr29:26615783-26615969 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 49, 62

Conread position: 307-498
Cow position: chr29:4066025-4065841 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 45, 60

Conread position: 307-501
Cow position: chr29:7407949-7408140 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 135
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 27, 45

Conread position: 307-501
Cow position: chr29:21000582-21000390 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 60

Conread position: 307-503
Cow position: chr29:9139352-9139155 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 45, 89

Conread position: 307-504
Cow position: chr29:961863-961665 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 48, 30

Conread position: 307-504
Cow position: chr29:5919383-5919579 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 307-504
Cow position: chr29:5977172-5977375 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 39, 145

Conread position: 307-504
Cow position: chr29:12004822-12005018 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 95

Conread position: 307-504
Cow position: chr29:12784017-12784209 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 94

Conread position: 307-504
Cow position: chr29:24952627-24952432 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 54, 44

Conread position: 307-504
Cow position: chr29:28195574-28195773 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 48, 88

Conread position: 307-504
Cow position: chr29:29769412-29769600 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 51, 45

Conread position: 307-504
Cow position: chr29:40891757-40891956 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 139
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 314-504
Cow position: chr29:4480240-4480426 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 153, 0

Conread position: 330-504
Cow position: chr29:686270-686445 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 89

Conread position: 344-504
Cow position: chr29:35434778-35434616 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 353-501
Cow position: chr29:45588579-45588724 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 50

Conread position: 356-504
Cow position: chr29:26778778-26778630 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.