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Cow genome map

           
Conread name:
           
Ss1.1-Pig2-104J14.5
        

               
Conread position:
               
1-116
               

               
Cow position:
               
chr5:35247141-35247256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 21
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr5:43395169-43395284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 113
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr5:57271294-57271414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr5:71579146-71579028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr5:52000193-52000076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr5:52165207-52165325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
88, 113
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr5:44049672-44049550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr5:7140137-7140258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr5:21040002-21040119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 86
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr5:51490787-51490909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-130
               

               
Cow position:
               
chr5:55176861-55176730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
86, 59
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr5:4032021-4032222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr5:25495378-25495573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr5:36855176-36854977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
123, 102
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr5:7921429-7921618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr5:11668213-11668417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr5:34300887-34300684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 59
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr5:34115621-34115420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr5:4347757-4347955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr5:24349079-24348859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr5:24485466-24485665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
132, 44
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr5:44796760-44796970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 79
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:29828020-29827799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:33414438-33414659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
61, 110
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr5:52645108-52645335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
86, 59
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:16206184-16206399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
86, 58
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:16509067-16508839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:31020165-31020371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:31469611-31469840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:44583157-44583375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:58519433-58519656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:64844155-64844374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:65932957-65933185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr5:43858464-43858686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr5:53855669-53855446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
2-106
               

               
Cow position:
               
chr5:40039800-40039903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
2-117
               

               
Cow position:
               
chr5:57327767-57327650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 112
               

               
Conread position:
               
2-122
               

               
Cow position:
               
chr5:21964257-21964135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 110
               

               
Conread position:
               
2-129
               

               
Cow position:
               
chr5:17644685-17644819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chr5:56820292-56820487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 57
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr5:19079084-19078900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 113
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr5:30487207-30486996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
87, 166
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr5:35763245-35763036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
111, 64
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr5:56467670-56467447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr5:60520131-60519928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:26370664-26370453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
59, 28
               

               
Conread position:
               
4-119
               

               
Cow position:
               
chr5:45025950-45026067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr5:30253709-30253516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
84, 56
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr5:25035275-25035467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
91, 62
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:50723017-50722795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
5-190
               

               
Cow position:
               
chr5:42744755-42744556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
6-203
               

               
Cow position:
               
chr5:5785487-5785693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
6-206
               

               
Cow position:
               
chr5:50821748-50821530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
83, 54
               

               
Conread position:
               
11-196
               

               
Cow position:
               
chr5:41392698-41392498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
13-206
               

               
Cow position:
               
chr5:40058514-40058319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
107, 46
               

               
Conread position:
               
15-205
               

               
Cow position:
               
chr5:14538701-14538906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
17-191
               

               
Cow position:
               
chr5:26477057-26477235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
134, 43
               

               
Conread position:
               
29-200
               

               
Cow position:
               
chr5:55232852-55233027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
31-178
               

               
Cow position:
               
chr5:57156716-57156559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 90
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr5:31635370-31635197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
169-504
               

               
Cow position:
               
chr5:41522696-41523020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
57, 5
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chr5:18574242-18573943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
202-501
               

               
Cow position:
               
chr5:5257222-5257521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
202-504
               

               
Cow position:
               
chr5:54404815-54405122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
219-504
               

               
Cow position:
               
chr5:52165123-52165409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
227-504
               

               
Cow position:
               
chr5:21944446-21944154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 6
               

               
Conread position:
               
229-504
               

               
Cow position:
               
chr5:37941748-37942020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 6
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:14550543-14550813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
250-504
               

               
Cow position:
               
chr5:20128078-20127827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
251-504
               

               
Cow position:
               
chr5:60715339-60715582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
260-504
               

               
Cow position:
               
chr5:57935093-57935341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chr5:9090013-9090250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
268-504
               

               
Cow position:
               
chr5:34505925-34506153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
268-504
               

               
Cow position:
               
chr5:35208272-35208034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 86
               

               
Conread position:
               
269-504
               

               
Cow position:
               
chr5:47704121-47704362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
269-504
               

               
Cow position:
               
chr5:55966875-55967110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chr5:17999487-17999723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chr5:24996217-24996451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chr5:44994035-44994264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chr5:52000228-51999992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
271-504
               

               
Cow position:
               
chr5:34921833-34922062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
271-504
               

               
Cow position:
               
chr5:56524174-56523947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 42
               

               
Conread position:
               
274-493
               

               
Cow position:
               
chr5:49361989-49362207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
274-500
               

               
Cow position:
               
chr5:34528555-34528338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chr5:4506952-4507188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chr5:47871040-47871278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chr5:54350361-54350588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
275-490
               

               
Cow position:
               
chr5:6503883-6504093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr5:15598235-15598461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr5:45225823-45226051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
35, 129
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr5:64137254-64137024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr5:3281832-3281604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr5:4031992-4032216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 123
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr5:28926182-28926412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr5:39094555-39094326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
33, 130
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr5:41303087-41303318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 95
               

               
Conread position:
               
277-504
               

               
Cow position:
               
chr5:40889283-40889511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
282-493
               

               
Cow position:
               
chr5:26262682-26262890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
283-495
               

               
Cow position:
               
chr5:45037014-45036804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
283-498
               

               
Cow position:
               
chr5:37646553-37646773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 89
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr5:6987156-6986931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 88
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr5:14420350-14420572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr5:32963638-32963856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
27, 44
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr5:44752324-44752537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 29
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr5:56433797-56433574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr5:65932935-65933155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
288-504
               

               
Cow position:
               
chr5:5938313-5938097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
288-504
               

               
Cow position:
               
chr5:21525160-21524937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
288-504
               

               
Cow position:
               
chr5:28330344-28330559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 119
               

               
Conread position:
               
288-504
               

               
Cow position:
               
chr5:65601446-65601233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 27
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr5:18702222-18702440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr5:31469595-31469810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 117
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr5:33661844-33661627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr5:50729481-50729268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 23
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr5:61600406-61600185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
292-504
               

               
Cow position:
               
chr5:7764061-7763846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
295-504
               

               
Cow position:
               
chr5:26990373-26990166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 62
               

               
Conread position:
               
296-498
               

               
Cow position:
               
chr5:37366877-37366676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
298-476
               

               
Cow position:
               
chr5:56518232-56518409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 72
               

               
Conread position:
               
298-491
               

               
Cow position:
               
chr5:35235731-35235923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 49
               

               
Conread position:
               
298-498
               

               
Cow position:
               
chr5:30845089-30844890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 103
               

               
Conread position:
               
298-498
               

               
Cow position:
               
chr5:53835691-53835493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
298-499
               

               
Cow position:
               
chr5:67932489-67932683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
298-500
               

               
Cow position:
               
chr5:43858457-43858651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
298-501
               

               
Cow position:
               
chr5:72564740-72564538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr5:16185065-16184862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
12, 105
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr5:21828844-21828637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 72
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr5:27015659-27015464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 69
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr5:27155002-27154795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 61
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr5:30816697-30816488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr5:57074356-57074562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr5:60520140-60519939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
8, 57
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr5:61840170-61839961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr5:65776404-65776613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr5:75436909-75437124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
299-491
               

               
Cow position:
               
chr5:49821119-49820928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
299-495
               

               
Cow position:
               
chr5:65941275-65941472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
299-501
               

               
Cow position:
               
chr5:58856081-58855880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 100
               

               
Conread position:
               
299-504
               

               
Cow position:
               
chr5:51151381-51151590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 55
               

               
Conread position:
               
300-498
               

               
Cow position:
               
chr5:16025485-16025682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
300-504
               

               
Cow position:
               
chr5:41951118-41951311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
301-504
               

               
Cow position:
               
chr5:59443277-59443478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
306-467
               

               
Cow position:
               
chr5:50870513-50870351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
306-501
               

               
Cow position:
               
chr5:46322843-46323036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
58, 71
               

               
Conread position:
               
306-504
               

               
Cow position:
               
chr5:28324321-28324118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
306-504
               

               
Cow position:
               
chr5:63917443-63917637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
306-504
               

               
Cow position:
               
chr5:64321719-64321521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
115, 60
               

               
Conread position:
               
307-465
               

               
Cow position:
               
chr5:7044741-7044899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
307-486
               

               
Cow position:
               
chr5:40039804-40039980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-487
               

               
Cow position:
               
chr5:55176856-55176676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-498
               

               
Cow position:
               
chr5:56028562-56028751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
307-500
               

               
Cow position:
               
chr5:18090690-18090504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr5:5111109-5111301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr5:28230120-28229933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr5:29828015-29827829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr5:63388760-63388570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:14314491-14314295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:24349074-24348884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 94
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:26377703-26377894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:26467589-26467393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:27403270-27403471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:28927623-28927820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:34441825-34442019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:34916105-34915915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 44
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:37646040-37645846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:37814588-37814396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:43474813-43474620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 65
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:44054069-44054265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:45845728-45845922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:47601785-47601590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr5:56820296-56820487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
308-501
               

               
Cow position:
               
chr5:40356900-40357094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 136
               

               
Conread position:
               
308-501
               

               
Cow position:
               
chr5:64176152-64176345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 59
               

               
Conread position:
               
308-504
               

               
Cow position:
               
chr5:1104896-1105098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
310-498
               

               
Cow position:
               
chr5:54530947-54530761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 33
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chr5:35684899-35684707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chr5:56070819-56070626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chr5:59297996-59298186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
312-504
               

               
Cow position:
               
chr5:67243888-67243697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
313-490
               

               
Cow position:
               
chr5:35969501-35969329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 31
               

               
Conread position:
               
313-504
               

               
Cow position:
               
chr5:47888749-47888942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
314-495
               

               
Cow position:
               
chr5:62142629-62142452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
316-504
               

               
Cow position:
               
chr5:10789719-10789905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
317-504
               

               
Cow position:
               
chr5:54064736-54064552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
318-504
               

               
Cow position:
               
chr5:64844167-64844344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
323-504
               

               
Cow position:
               
chr5:2851268-2851087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 161
               

               
Conread position:
               
330-504
               

               
Cow position:
               
chr5:61725917-61725743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
340-476
               

               
Cow position:
               
chr5:9390472-9390336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-500
               

               
Cow position:
               
chr5:6528616-6528457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
340-504
               

               
Cow position:
               
chr5:58793681-58793842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
350-504
               

               
Cow position:
               
chr5:67212307-67212151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 97
               

               
Conread position:
               
362-504
               

               
Cow position:
               
chr5:31640342-31640200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.