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Cow genome map

           
Conread name:
           
Ss1.1-Pig2-104J14.5
        

               
Conread position:
               
1-100
               

               
Cow position:
               
chrX:13382302-13382200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chrX:27228100-27227984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chrX:36961615-36961500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chrX:3579917-3579800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chrX:7336801-7336684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 115
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chrX:29680288-29680404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
86, 59
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chrX:32821002-32820884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
66, 116
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chrX:8797225-8797106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
85, 111
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chrX:10831521-10831638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
87, 57
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chrX:1499637-1499517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chrX:6234480-6234601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chrX:48684253-48684375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chrX:11856400-11856195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chrX:45113591-45113391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chrX:44961721-44961507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chrX:35284592-35284375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chrX:38967620-38967405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chrX:47209319-47209124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chrX:41166992-41167211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chrX:40826779-40826997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chrX:7351273-7351048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chrX:34441479-34441701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 155
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chrX:38964077-38963858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:17498057-17497843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:25815936-25816149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:7695715-7695507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:15231687-15231884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
201, 21
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:16762741-16762516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 26
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:18694952-18695177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:19188910-19188680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:20151822-20151594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:23563818-23564053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:27705559-27705337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
66, 117
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:31294591-31294796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 46
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:32020147-32020378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:34454637-34454413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
62, 26
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:35413593-35413374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:42994585-42994358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chrX:6690284-6690503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chrX:23497696-23497919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chrX:33466582-33466360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 50
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chrX:28845803-28845589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
119, 80
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chrX:48246878-48247095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chrX:20752227-20751981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
2-110
               

               
Cow position:
               
chrX:22387271-22387382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
2-116
               

               
Cow position:
               
chrX:29509470-29509588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
2-117
               

               
Cow position:
               
chrX:29601859-29601974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chrX:35681312-35681118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chrX:39558379-39558580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chrX:34662876-34663080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chrX:41743883-41743669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
2-200
               

               
Cow position:
               
chrX:28846910-28847129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chrX:34565252-34565044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 50
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chrX:37843692-37843464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chrX:7178869-7178647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
3-117
               

               
Cow position:
               
chrX:11589617-11589733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
85, 108
               

               
Conread position:
               
3-117
               

               
Cow position:
               
chrX:21593258-21593142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
86, 108
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chrX:8925671-8925452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
84, 57
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chrX:30922156-30921931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:28878199-28878415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
62, 73
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:11614670-11614465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
84, 111
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chrX:23514046-23514258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chrX:43567891-43567698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chrX:43730250-43730452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 55
               

               
Conread position:
               
6-186
               

               
Cow position:
               
chrX:15815052-15814861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
6-201
               

               
Cow position:
               
chrX:11844281-11844492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
8-183
               

               
Cow position:
               
chrX:12405417-12405602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 116
               

               
Conread position:
               
8-190
               

               
Cow position:
               
chrX:2206585-2206784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 71
               

               
Conread position:
               
8-201
               

               
Cow position:
               
chrX:5118536-5118736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
10-204
               

               
Cow position:
               
chrX:39555866-39556071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
10-205
               

               
Cow position:
               
chrX:46276439-46276639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
103, 78
               

               
Conread position:
               
15-205
               

               
Cow position:
               
chrX:35409616-35409412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
34-201
               

               
Cow position:
               
chrX:28866060-28866243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
46-201
               

               
Cow position:
               
chrX:12437325-12437490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
164-500
               

               
Cow position:
               
chrX:38549548-38549226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
201-498
               

               
Cow position:
               
chrX:29601760-29602053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
213-504
               

               
Cow position:
               
chrX:25238236-25237951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
216-504
               

               
Cow position:
               
chrX:12309328-12309615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
217-467
               

               
Cow position:
               
chrX:38853259-38853007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
16, 154
               

               
Conread position:
               
217-480
               

               
Cow position:
               
chrX:37781048-37781320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
217-486
               

               
Cow position:
               
chrX:40480808-40481080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
217-500
               

               
Cow position:
               
chrX:13647724-13648006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
219-501
               

               
Cow position:
               
chrX:10437609-10437888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 114
               

               
Conread position:
               
254-504
               

               
Cow position:
               
chrX:46722712-46722967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 38
               

               
Conread position:
               
258-503
               

               
Cow position:
               
chrX:6278482-6278731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
260-504
               

               
Cow position:
               
chrX:8900043-8899798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
267-501
               

               
Cow position:
               
chrX:9635179-9635404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chrX:14900719-14900947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chrX:17662584-17662823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chrX:23497658-23497889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chrX:42874994-42874752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 222
               

               
Conread position:
               
268-485
               

               
Cow position:
               
chrX:10831483-10831704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 90
               

               
Conread position:
               
268-504
               

               
Cow position:
               
chrX:20339882-20340117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
269-504
               

               
Cow position:
               
chrX:33493785-33493549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
41, 102
               

               
Conread position:
               
269-504
               

               
Cow position:
               
chrX:33639981-33639745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
270-499
               

               
Cow position:
               
chrX:23091871-23091660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
270-503
               

               
Cow position:
               
chrX:11717781-11718005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 84
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chrX:34402007-34401771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chrX:35681348-35681119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 135
               

               
Conread position:
               
271-501
               

               
Cow position:
               
chrX:29509434-29509667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
271-504
               

               
Cow position:
               
chrX:8797260-8797022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
17, 210
               

               
Conread position:
               
274-467
               

               
Cow position:
               
chrX:36961646-36961446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
274-500
               

               
Cow position:
               
chrX:26875882-26876103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chrX:2467884-2467653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chrX:5872322-5872087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chrX:22815949-22815715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chrX:31948935-31949157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chrX:34441448-34441676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chrX:40116418-40116199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
87, 30
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chrX:48010604-48010368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chrX:48195035-48195267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
275-467
               

               
Cow position:
               
chrX:33000905-33000714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 80
               

               
Conread position:
               
275-498
               

               
Cow position:
               
chrX:35609991-35609766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
34, 129
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chrX:22813067-22812836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chrX:47481804-47481573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
34, 131
               

               
Conread position:
               
276-482
               

               
Cow position:
               
chrX:17908287-17908488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chrX:15007148-15007377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 158
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chrX:41884411-41884644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chrX:42994614-42994388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 66
               

               
Conread position:
               
283-501
               

               
Cow position:
               
chrX:1616050-1616271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
283-501
               

               
Cow position:
               
chrX:34502916-34502697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 87
               

               
Conread position:
               
283-501
               

               
Cow position:
               
chrX:44961743-44961524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chrX:917371-917595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chrX:13382324-13382098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
27, 205
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chrX:25338179-25337953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chrX:32127996-32128206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chrX:39558356-39558574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
286-504
               

               
Cow position:
               
chrX:11656083-11655860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
287-504
               

               
Cow position:
               
chrX:28846890-28847105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
288-501
               

               
Cow position:
               
chrX:24105613-24105403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 26
               

               
Conread position:
               
288-501
               

               
Cow position:
               
chrX:40035454-40035673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
288-504
               

               
Cow position:
               
chrX:34543769-34543561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
289-501
               

               
Cow position:
               
chrX:21663293-21663086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
298-460
               

               
Cow position:
               
chrX:32821009-32820847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
298-498
               

               
Cow position:
               
chrX:19015412-19015222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
298-498
               

               
Cow position:
               
chrX:36283331-36283125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
298-500
               

               
Cow position:
               
chrX:14924980-14924778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
11, 107
               

               
Conread position:
               
298-500
               

               
Cow position:
               
chrX:19019127-19019334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
298-500
               

               
Cow position:
               
chrX:27394043-27394236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:8925680-8925477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 105
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:11073214-11073417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:12116025-12115812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
12, 109
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:16416487-16416282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:19188917-19188710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 94
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:23563811-23564023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:25411820-25411614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:26440799-26441006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:27516508-27516306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:32020140-32020348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:35542874-35542665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 72
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:40647965-40647752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 72
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:41743891-41743687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
12, 106
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chrX:42171317-42171525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
11, 57
               

               
Conread position:
               
299-498
               

               
Cow position:
               
chrX:10412008-10412206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
299-504
               

               
Cow position:
               
chrX:21672534-21672325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
300-504
               

               
Cow position:
               
chrX:31436453-31436254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 68
               

               
Conread position:
               
300-504
               

               
Cow position:
               
chrX:34754212-34754418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
304-504
               

               
Cow position:
               
chrX:35387929-35388133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 51
               

               
Conread position:
               
306-504
               

               
Cow position:
               
chrX:36778380-36778180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
306-504
               

               
Cow position:
               
chrX:37232381-37232183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 48
               

               
Conread position:
               
307-467
               

               
Cow position:
               
chrX:30832882-30833035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
307-482
               

               
Cow position:
               
chrX:23785630-23785449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
307-486
               

               
Cow position:
               
chrX:9425773-9425950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-493
               

               
Cow position:
               
chrX:42492550-42492729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
307-499
               

               
Cow position:
               
chrX:11633647-11633457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 47
               

               
Conread position:
               
307-500
               

               
Cow position:
               
chrX:42461777-42461968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
307-500
               

               
Cow position:
               
chrX:46072853-46073044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 45
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chrX:2383456-2383266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chrX:9997368-9997556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chrX:11589620-11589815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 124
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chrX:17042660-17042467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
54, 94
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chrX:20710042-20709848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chrX:38439445-38439250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-503
               

               
Cow position:
               
chrX:16541704-16541901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
48, 178
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:3654575-3654378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:7721956-7721758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:9416726-9416919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:18694957-18695147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
176, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:19930618-19930430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:21593255-21593057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:25035412-25035613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 181
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:31260660-31260856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 36
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:35042192-35041993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:38006797-38006994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:38094554-38094751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 138
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:38967615-38967424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:40183376-40183576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:41166997-41167190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:42011246-42011054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chrX:42381135-42381326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
308-501
               

               
Cow position:
               
chrX:40452243-40452436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 46
               

               
Conread position:
               
308-504
               

               
Cow position:
               
chrX:23514048-23514244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
6, 45
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chrX:619040-619234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chrX:4123802-4123609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
313-504
               

               
Cow position:
               
chrX:27431953-27432145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
315-501
               

               
Cow position:
               
chrX:14883999-14884185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
316-504
               

               
Cow position:
               
chrX:9855263-9855074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
316-504
               

               
Cow position:
               
chrX:9954104-9953915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
320-501
               

               
Cow position:
               
chrX:4750350-4750521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
38, 34
               

               
Conread position:
               
330-501
               

               
Cow position:
               
chrX:31442877-31443044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
330-504
               

               
Cow position:
               
chrX:17794927-17794759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
330-504
               

               
Cow position:
               
chrX:26625726-26625903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
330-504
               

               
Cow position:
               
chrX:42855359-42855182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
340-504
               

               
Cow position:
               
chrX:48536728-48536891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
344-501
               

               
Cow position:
               
chrX:42499096-42499252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
359-498
               

               
Cow position:
               
chrX:7382238-7382103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
360-504
               

               
Cow position:
               
chrX:2523813-2523956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
23, 10
               
Show alignments to all cow chromosomes.