Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-192 |
| Cow position: | chr10:15618774-15618581 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 1-229 |
| Cow position: | chr10:11275648-11275888 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 1-229 |
| Cow position: | chr10:12875813-12875585 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 126, 83 |
| Conread position: | 1-230 |
| Cow position: | chr10:28566250-28566013 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 73, 92 |
| Conread position: | 1-235 |
| Cow position: | chr10:1351930-1352172 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 1-489 |
| Cow position: | chr10:48193682-48193191 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 1-545 |
| Cow position: | chr10:3317858-3318444 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 1-551 |
| Cow position: | chr10:767779-767222 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 1-558 |
| Cow position: | chr10:22455193-22455762 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 1-575 |
| Cow position: | chr10:37428679-37428088 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 103-347 |
| Cow position: | chr10:48208692-48208426 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 103-386 |
| Cow position: | chr10:25257727-25258018 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 107-568 |
| Cow position: | chr10:23880058-23879570 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 90 |
| Conread position: | 108-575 |
| Cow position: | chr10:12199107-12199612 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 243 |
| Conread position: | 111-473 |
| Cow position: | chr10:68979651-68980015 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 16, 85 |
| Conread position: | 119-431 |
| Cow position: | chr10:27222881-27223220 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 133-579 |
| Cow position: | chr10:4605801-4605349 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 356, 297 |
| Conread position: | 173-552 |
| Cow position: | chr10:28193971-28193616 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 184-544 |
| Cow position: | chr10:1328281-1327935 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 213-465 |
| Cow position: | chr10:17923247-17923493 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 190 |
| Conread position: | 219-543 |
| Cow position: | chr10:18863106-18863431 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 221-488 |
| Cow position: | chr10:15824294-15824025 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 228-551 |
| Cow position: | chr10:11275907-11276235 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 173 |
| Conread position: | 228-551 |
| Cow position: | chr10:43060852-43060526 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 168 |
| Conread position: | 228-565 |
| Cow position: | chr10:47583938-47584269 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 229-545 |
| Cow position: | chr10:17415640-17415340 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 229-551 |
| Cow position: | chr10:2711495-2711168 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 229-551 |
| Cow position: | chr10:50141273-50140950 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 34, 129 |
| Conread position: | 229-569 |
| Cow position: | chr10:68203849-68203502 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 289 |
| Conread position: | 232-400 |
| Cow position: | chr10:6792453-6792624 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 232-579 |
| Cow position: | chr10:17745367-17745703 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 234-368 |
| Cow position: | chr10:55438024-55437895 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 234-569 |
| Cow position: | chr10:3854988-3855312 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 36, 69 |
| Conread position: | 249-563 |
| Cow position: | chr10:15618173-15617864 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 250-566 |
| Cow position: | chr10:35181956-35182274 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 262-536 |
| Cow position: | chr10:17513595-17513336 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 267-545 |
| Cow position: | chr10:24609062-24609350 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 272-541 |
| Cow position: | chr10:16669059-16668783 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 276-567 |
| Cow position: | chr10:52131859-52132149 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 278-486 |
| Cow position: | chr10:37092795-37092583 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 285-551 |
| Cow position: | chr10:41638089-41638362 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 292-531 |
| Cow position: | chr10:67051199-67051440 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 292-546 |
| Cow position: | chr10:37665282-37665023 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 108 |
| Conread position: | 295-561 |
| Cow position: | chr10:5422072-5421797 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 81 |
| Conread position: | 296-545 |
| Cow position: | chr10:57404361-57404124 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 299-549 |
| Cow position: | chr10:63621558-63621305 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 50, 119 |
| Conread position: | 302-565 |
| Cow position: | chr10:62199670-62199420 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 304-541 |
| Cow position: | chr10:21563304-21563560 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 304-553 |
| Cow position: | chr10:21477293-21477548 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 306-513 |
| Cow position: | chr10:54342983-54342770 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 319-524 |
| Cow position: | chr10:31220496-31220706 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 321-579 |
| Cow position: | chr10:45195703-45195967 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 92, 12 |
| Conread position: | 325-532 |
| Cow position: | chr10:60243958-60244166 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 78 |
| Conread position: | 326-489 |
| Cow position: | chr10:23589791-23589632 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 336-550 |
| Cow position: | chr10:48208302-48208090 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 337-488 |
| Cow position: | chr10:29487223-29487378 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 349-559 |
| Cow position: | chr10:33995629-33995416 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 117, 49 |
| Conread position: | 351-500 |
| Cow position: | chr10:49280150-49279995 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 351-522 |
| Cow position: | chr10:4994063-4993892 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 55, 28 |
| Conread position: | 355-542 |
| Cow position: | chr10:4013657-4013841 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 355-542 |
| Cow position: | chr10:62629705-62629889 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 135, 27 |
| Conread position: | 361-545 |
| Cow position: | chr10:25536405-25536598 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 369-560 |
| Cow position: | chr10:30320800-30320989 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 379-546 |
| Cow position: | chr10:25008811-25008642 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 388-557 |
| Cow position: | chr10:55437621-55437451 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 396-553 |
| Cow position: | chr10:30708726-30708569 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 405-545 |
| Cow position: | chr10:55874166-55874305 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 83, 44 |
| Conread position: | 412-542 |
| Cow position: | chr10:30358051-30357918 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 415-551 |
| Cow position: | chr10:9464655-9464785 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 422-571 |
| Cow position: | chr10:46010276-46010126 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 66, 136 |
| Conread position: | 425-574 |
| Cow position: | chr10:46073640-46073795 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 428-547 |
| Cow position: | chr10:27224172-27224291 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 22 |
Show alignments to all cow chromosomes.