Cow genome map

Conread name: Ss1.1-Pig2-119N20.5

Conread position: 1-191
Cow position: chr11:87169615-87169420 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 112, 12

Conread position: 1-219
Cow position: chr11:24008083-24008304 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 94, 67

Conread position: 1-245
Cow position: chr11:1775034-1774775 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 73, 94

Conread position: 1-353
Cow position: chr11:9423916-9424292 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 126, 12

Conread position: 1-488
Cow position: chr11:57061879-57062375 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 45

Conread position: 1-488
Cow position: chr11:77756758-77756243 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 65

Conread position: 1-493
Cow position: chr11:35251990-35251474 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 83

Conread position: 1-532
Cow position: chr11:77772684-77772138 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 74

Conread position: 1-536
Cow position: chr11:12790805-12791328 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 94

Conread position: 1-542
Cow position: chr11:69491421-69491980 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 74

Conread position: 1-543
Cow position: chr11:25972910-25972374 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 74

Conread position: 1-545
Cow position: chr11:18154249-18153680 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 12

Conread position: 1-551
Cow position: chr11:43831792-43831236 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 99

Conread position: 1-560
Cow position: chr11:5221429-5220848 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 87

Conread position: 1-572
Cow position: chr11:55119486-55120070 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 48

Conread position: 2-350
Cow position: chr11:51177496-51177850 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 262
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 125, 47

Conread position: 2-513
Cow position: chr11:10877256-10877793 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 17

Conread position: 2-513
Cow position: chr11:40574759-40574231 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 3-177
Cow position: chr11:25856191-25856362 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 94, 70

Conread position: 42-582
Cow position: chr11:25807699-25807128 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 58

Conread position: 92-475
Cow position: chr11:77820177-77819784 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 49

Conread position: 100-514
Cow position: chr11:57153565-57153117 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 97

Conread position: 102-547
Cow position: chr11:82528975-82529452 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 92

Conread position: 103-404
Cow position: chr11:21893369-21893057 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 228
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 24, 13

Conread position: 104-542
Cow position: chr11:34761613-34761159 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 230

Conread position: 106-551
Cow position: chr11:77763399-77762942 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 341
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 24, 35

Conread position: 108-571
Cow position: chr11:22851142-22851637 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 364

Conread position: 167-453
Cow position: chr11:25856376-25856669 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 27

Conread position: 184-529
Cow position: chr11:58793811-58793449 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 157

Conread position: 188-551
Cow position: chr11:87168553-87168207 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 255
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 75, 29

Conread position: 200-523
Cow position: chr11:70605597-70605928 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 46, 214

Conread position: 207-509
Cow position: chr11:77713417-77713123 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 143, 25

Conread position: 227-513
Cow position: chr11:27610692-27610970 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 212
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 17, 27

Conread position: 228-492
Cow position: chr11:80269592-80269337 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 26, 43

Conread position: 228-543
Cow position: chr11:17737567-17737887 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 8, 17

Conread position: 228-554
Cow position: chr11:25379605-25379288 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 223
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 35, 194

Conread position: 228-559
Cow position: chr11:24008350-24008681 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 234
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 35, 30

Conread position: 228-579
Cow position: chr11:34303715-34304069 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 173

Conread position: 229-545
Cow position: chr11:74171359-74171045 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 120

Conread position: 229-577
Cow position: chr11:18452891-18452548 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 131

Conread position: 231-520
Cow position: chr11:11109850-11109554 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 32, 16

Conread position: 231-545
Cow position: chr11:57753127-57752805 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 217

Conread position: 231-566
Cow position: chr11:21544306-21544632 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 235
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 32, 27

Conread position: 232-491
Cow position: chr11:84729195-84729454 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 31, 52

Conread position: 232-543
Cow position: chr11:27817247-27816948 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 71

Conread position: 232-565
Cow position: chr11:15885552-15885886 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 143

Conread position: 232-569
Cow position: chr11:8087895-8087562 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 33

Conread position: 233-562
Cow position: chr11:29785357-29785699 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 157

Conread position: 234-396
Cow position: chr11:61754137-61754299 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 108

Conread position: 235-541
Cow position: chr11:81337018-81336717 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 207
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 28, 121

Conread position: 235-544
Cow position: chr11:39830964-39830665 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 28, 78

Conread position: 238-545
Cow position: chr11:34397743-34398053 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 75

Conread position: 239-357
Cow position: chr11:30660451-30660570 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 239-399
Cow position: chr11:58579871-58580035 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 239-551
Cow position: chr11:12064971-12065270 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 196

Conread position: 246-551
Cow position: chr11:64101322-64101630 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 223
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 19, 53

Conread position: 254-551
Cow position: chr11:1774617-1774306 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 226
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 9, 128

Conread position: 285-524
Cow position: chr11:77477947-77477723 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 70, 0

Conread position: 285-524
Cow position: chr11:77478621-77478397 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 70, 0

Conread position: 285-551
Cow position: chr11:44064189-44064465 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 291-551
Cow position: chr11:19567354-19567608 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 130

Conread position: 292-544
Cow position: chr11:43855915-43855660 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 41

Conread position: 292-574
Cow position: chr11:35284417-35284691 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 209
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 196, 68

Conread position: 295-543
Cow position: chr11:55283211-55282944 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 304-472
Cow position: chr11:60511752-60511577 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 307-546
Cow position: chr11:17054112-17053870 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 52, 33

Conread position: 320-551
Cow position: chr11:21909792-21909554 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 59

Conread position: 321-539
Cow position: chr11:54204479-54204261 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 181
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 34, 14

Conread position: 327-545
Cow position: chr11:18090489-18090713 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 133

Conread position: 334-500
Cow position: chr11:81987756-81987586 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 22

Conread position: 336-471
Cow position: chr11:47347002-47347136 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 17, 62

Conread position: 342-551
Cow position: chr11:65777392-65777189 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 147, 9

Conread position: 343-551
Cow position: chr11:38009643-38009439 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 144, 22

Conread position: 345-511
Cow position: chr11:15106433-15106262 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 57, 16

Conread position: 349-566
Cow position: chr11:30660661-30660888 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 351-579
Cow position: chr11:34265805-34266027 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 137, 43

Conread position: 352-551
Cow position: chr11:53663512-53663703 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 363-477
Cow position: chr11:9295245-9295128 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 369-569
Cow position: chr11:3261108-3261304 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 115, 29

Conread position: 370-566
Cow position: chr11:15374178-15374371 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 56, 131

Conread position: 374-529
Cow position: chr11:39166579-39166741 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 25, 99

Conread position: 378-551
Cow position: chr11:16363993-16363813 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 149
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 31, 79

Conread position: 383-578
Cow position: chr11:34024947-34025138 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 18, 70

Conread position: 388-575
Cow position: chr11:67960735-67960915 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 102

Conread position: 395-540
Cow position: chr11:462690-462838 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 395-546
Cow position: chr11:9424410-9424560 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 10

Conread position: 407-579
Cow position: chr11:80780556-80780729 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 83, 91

Conread position: 410-551
Cow position: chr11:85005860-85006009 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 412-553
Cow position: chr11:53331219-53331365 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 413-546
Cow position: chr11:2813278-2813416 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 433-564
Cow position: chr11:35318327-35318454 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 42, 0

Show alignments to all cow chromosomes.