Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-230 |
| Cow position: | chr12:33277895-33278125 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 126, 27 |
| Conread position: | 1-256 |
| Cow position: | chr12:29760656-29760399 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 1-321 |
| Cow position: | chr12:23892513-23892843 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 126, 37 |
| Conread position: | 1-523 |
| Cow position: | chr12:21064796-21064273 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 344 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 60, 146 |
| Conread position: | 1-543 |
| Cow position: | chr12:16961588-16962148 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 20 |
| Conread position: | 1-544 |
| Cow position: | chr12:26311102-26310555 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 1-545 |
| Cow position: | chr12:10161979-10161397 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 1-579 |
| Cow position: | chr12:21066181-21066793 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 71 |
| Conread position: | 14-248 |
| Cow position: | chr12:25513878-25514112 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 112, 25 |
| Conread position: | 27-551 |
| Cow position: | chr12:2838237-2837704 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 46 |
| Conread position: | 101-515 |
| Cow position: | chr12:36975352-36974908 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 318 |
| Conread position: | 106-564 |
| Cow position: | chr12:8468100-8467624 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 208-569 |
| Cow position: | chr12:11306432-11306063 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 210-337 |
| Cow position: | chr12:38632214-38632342 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 210-544 |
| Cow position: | chr12:28214308-28214642 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 212-545 |
| Cow position: | chr12:33277412-33277067 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 201 |
| Conread position: | 227-504 |
| Cow position: | chr12:1993349-1993060 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 232-557 |
| Cow position: | chr12:7936839-7936521 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 232-557 |
| Cow position: | chr12:8767397-8767065 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 233-551 |
| Cow position: | chr12:12709934-12709635 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 233-557 |
| Cow position: | chr12:33278156-33278463 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 30, 125 |
| Conread position: | 234-513 |
| Cow position: | chr12:27423492-27423775 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 136 |
| Conread position: | 237-560 |
| Cow position: | chr12:20227143-20226815 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 239-525 |
| Cow position: | chr12:7025209-7024914 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 254-522 |
| Cow position: | chr12:7086360-7086628 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 74 |
| Conread position: | 255-545 |
| Cow position: | chr12:38223295-38222989 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 8, 210 |
| Conread position: | 255-564 |
| Cow position: | chr12:5896818-5896496 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 264-551 |
| Cow position: | chr12:27718091-27718372 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 267-550 |
| Cow position: | chr12:23515971-23515692 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 101, 17 |
| Conread position: | 297-488 |
| Cow position: | chr12:12763913-12763720 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 96 |
| Conread position: | 297-579 |
| Cow position: | chr12:23499113-23499403 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 300-545 |
| Cow position: | chr12:33350640-33350884 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 89 |
| Conread position: | 312-551 |
| Cow position: | chr12:29759178-29758930 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 312-551 |
| Cow position: | chr12:34475915-34476152 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 317-551 |
| Cow position: | chr12:13582578-13582821 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 169 |
| Conread position: | 318-561 |
| Cow position: | chr12:19808984-19808730 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 338-569 |
| Cow position: | chr12:42854107-42854341 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 17, 116 |
| Conread position: | 350-565 |
| Cow position: | chr12:18337265-18337485 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 352-555 |
| Cow position: | chr12:29801542-29801752 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 356-545 |
| Cow position: | chr12:15147399-15147602 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 22 |
| Conread position: | 361-539 |
| Cow position: | chr12:25514457-25514644 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 371-543 |
| Cow position: | chr12:27111247-27111420 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 405-569 |
| Cow position: | chr12:20792134-20791969 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 83, 45 |
| Conread position: | 406-551 |
| Cow position: | chr12:39710033-39710181 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.