Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-196 |
| Cow position: | chr13:43384662-43384865 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 1-431 |
| Cow position: | chr13:39487364-39487813 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 19 |
| Conread position: | 1-545 |
| Cow position: | chr13:12325140-12325682 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 1-553 |
| Cow position: | chr13:37497765-37498308 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 19 |
| Conread position: | 1-567 |
| Cow position: | chr13:55406695-55407284 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 1-569 |
| Cow position: | chr13:34265053-34264486 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 34 |
| Conread position: | 1-584 |
| Cow position: | chr13:38362246-38361666 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 74 |
| Conread position: | 3-235 |
| Cow position: | chr13:45497289-45497530 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 70 |
| Conread position: | 3-544 |
| Cow position: | chr13:34885000-34885577 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 4-541 |
| Cow position: | chr13:38535347-38534808 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 71 |
| Conread position: | 7-488 |
| Cow position: | chr13:34931328-34931788 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 66 |
| Conread position: | 20-559 |
| Cow position: | chr13:19115475-19116016 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 13 |
| Conread position: | 50-488 |
| Cow position: | chr13:46464738-46464285 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 100-314 |
| Cow position: | chr13:9103776-9103547 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 92 |
| Conread position: | 100-419 |
| Cow position: | chr13:47280120-47279810 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 70 |
| Conread position: | 100-449 |
| Cow position: | chr13:24675797-24676163 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 137 |
| Conread position: | 103-507 |
| Cow position: | chr13:47325773-47325339 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 328 |
| Conread position: | 103-515 |
| Cow position: | chr13:51240859-51241295 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 106-476 |
| Cow position: | chr13:34336399-34336768 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 113-505 |
| Cow position: | chr13:25955478-25955064 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 120-493 |
| Cow position: | chr13:17169346-17169733 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 80 |
| Conread position: | 180-551 |
| Cow position: | chr13:11223190-11222830 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 183-400 |
| Cow position: | chr13:21826381-21826599 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 184-514 |
| Cow position: | chr13:5619453-5619111 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 184-520 |
| Cow position: | chr13:30835965-30836297 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 184-559 |
| Cow position: | chr13:43803155-43803534 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 185-532 |
| Cow position: | chr13:11570764-11570418 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 210-466 |
| Cow position: | chr13:20656583-20656854 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 63, 258 |
| Conread position: | 221-448 |
| Cow position: | chr13:21878412-21878180 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 221-527 |
| Cow position: | chr13:14080180-14079865 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 225-532 |
| Cow position: | chr13:26034605-26034323 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 228-385 |
| Cow position: | chr13:57746095-57746255 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 228-546 |
| Cow position: | chr13:6921305-6920997 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 229-395 |
| Cow position: | chr13:34502245-34502415 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 115 |
| Conread position: | 229-522 |
| Cow position: | chr13:51142735-51142445 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 145 |
| Conread position: | 229-545 |
| Cow position: | chr13:45497543-45497858 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 103 |
| Conread position: | 229-569 |
| Cow position: | chr13:12213755-12214105 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 229-569 |
| Cow position: | chr13:26255458-26255104 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 230-544 |
| Cow position: | chr13:15731291-15730975 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 16, 163 |
| Conread position: | 230-559 |
| Cow position: | chr13:19015188-19014855 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 231-500 |
| Cow position: | chr13:27844132-27843874 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 137, 87 |
| Conread position: | 231-545 |
| Cow position: | chr13:27529047-27529355 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 259, 73 |
| Conread position: | 231-551 |
| Cow position: | chr13:4908397-4908701 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 232-546 |
| Cow position: | chr13:33239793-33240115 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 101 |
| Conread position: | 232-583 |
| Cow position: | chr13:24404092-24403738 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 233-419 |
| Cow position: | chr13:26943086-26943279 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 234-531 |
| Cow position: | chr13:44144123-44143824 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 236-527 |
| Cow position: | chr13:28605697-28605997 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 166 |
| Conread position: | 240-551 |
| Cow position: | chr13:51435194-51434881 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 59 |
| Conread position: | 240-570 |
| Cow position: | chr13:43385089-43385417 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 40 |
| Conread position: | 252-531 |
| Cow position: | chr13:10854713-10854432 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 254-509 |
| Cow position: | chr13:12658015-12658266 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 254-575 |
| Cow position: | chr13:4796125-4796457 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 262-544 |
| Cow position: | chr13:698698-698970 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 226, 54 |
| Conread position: | 276-564 |
| Cow position: | chr13:59997476-59997175 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 67, 195 |
| Conread position: | 277-551 |
| Cow position: | chr13:22193736-22194011 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 284-482 |
| Cow position: | chr13:22984784-22984988 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 285-533 |
| Cow position: | chr13:11778201-11778431 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 285-569 |
| Cow position: | chr13:57611553-57611848 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 67, 167 |
| Conread position: | 292-510 |
| Cow position: | chr13:28590502-28590718 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 74 |
| Conread position: | 292-551 |
| Cow position: | chr13:18597024-18596777 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 151 |
| Conread position: | 292-554 |
| Cow position: | chr13:43928899-43928634 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 295-551 |
| Cow position: | chr13:48580645-48580388 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 81 |
| Conread position: | 296-584 |
| Cow position: | chr13:2416390-2416680 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 263 |
| Conread position: | 303-487 |
| Cow position: | chr13:9103266-9103082 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 334-574 |
| Cow position: | chr13:14708748-14708995 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 35, 219 |
| Conread position: | 336-553 |
| Cow position: | chr13:62271516-62271310 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 337-551 |
| Cow position: | chr13:15489909-15490126 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 346-532 |
| Cow position: | chr13:1364326-1364142 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 5, 30 |
| Conread position: | 350-516 |
| Cow position: | chr13:46373042-46372876 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 351-550 |
| Cow position: | chr13:18839469-18839668 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 351-568 |
| Cow position: | chr13:24197989-24197776 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 358-551 |
| Cow position: | chr13:30951063-30950860 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 362-568 |
| Cow position: | chr13:57746253-57746472 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 371-553 |
| Cow position: | chr13:20876671-20876482 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 374-551 |
| Cow position: | chr13:27795822-27796001 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 114, 29 |
| Conread position: | 396-545 |
| Cow position: | chr13:51177598-51177750 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 423-541 |
| Cow position: | chr13:33503014-33503134 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 35 |
Show alignments to all cow chromosomes.