Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-339 |
| Cow position: | chr14:38000542-38000198 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 72, 84 |
| Conread position: | 1-436 |
| Cow position: | chr14:21864011-21864445 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 99 |
| Conread position: | 1-442 |
| Cow position: | chr14:45018478-45018916 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 1-499 |
| Cow position: | chr14:27578771-27579279 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 57 |
| Conread position: | 1-545 |
| Cow position: | chr14:41713038-41712485 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 1-551 |
| Cow position: | chr14:40244190-40243618 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 9 |
| Conread position: | 1-554 |
| Cow position: | chr14:37983384-37983958 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 1-559 |
| Cow position: | chr14:47880109-47880679 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 1-569 |
| Cow position: | chr14:15011444-15012050 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 73 |
| Conread position: | 3-551 |
| Cow position: | chr14:35605295-35605867 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 3-551 |
| Cow position: | chr14:44886570-44885996 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 74 |
| Conread position: | 4-514 |
| Cow position: | chr14:2298898-2299413 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 70 |
| Conread position: | 7-551 |
| Cow position: | chr14:31810652-31810119 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 120, 72 |
| Conread position: | 51-554 |
| Cow position: | chr14:44454426-44453892 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 100-353 |
| Cow position: | chr14:30020925-30021202 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 100-433 |
| Cow position: | chr14:24783230-24783591 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 27, 198 |
| Conread position: | 102-543 |
| Cow position: | chr14:42693568-42693117 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 105 |
| Conread position: | 106-494 |
| Cow position: | chr14:42258865-42258465 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 106-584 |
| Cow position: | chr14:50650453-50649962 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 109 |
| Conread position: | 181-584 |
| Cow position: | chr14:20642834-20643230 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 184-540 |
| Cow position: | chr14:48415531-48415172 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 185-565 |
| Cow position: | chr14:45151922-45152312 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 29, 140 |
| Conread position: | 190-551 |
| Cow position: | chr14:34912129-34912500 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 153 |
| Conread position: | 219-560 |
| Cow position: | chr14:24193109-24192769 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 229-425 |
| Cow position: | chr14:27247240-27247049 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 229-478 |
| Cow position: | chr14:19339910-19340168 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 36, 163 |
| Conread position: | 229-566 |
| Cow position: | chr14:10949736-10950071 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 230-551 |
| Cow position: | chr14:19734990-19735315 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 53 |
| Conread position: | 230-571 |
| Cow position: | chr14:28007382-28007044 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 81 |
| Conread position: | 233-579 |
| Cow position: | chr14:50484583-50484259 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 235-551 |
| Cow position: | chr14:21730785-21731109 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 61 |
| Conread position: | 237-544 |
| Cow position: | chr14:16715627-16715310 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 158 |
| Conread position: | 237-553 |
| Cow position: | chr14:17556405-17556085 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 298 |
| Conread position: | 239-491 |
| Cow position: | chr14:24739009-24738751 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 242-404 |
| Cow position: | chr14:44249933-44249767 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 128 |
| Conread position: | 242-496 |
| Cow position: | chr14:32574911-32574648 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 242-567 |
| Cow position: | chr14:22046604-22046288 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 76 |
| Conread position: | 246-542 |
| Cow position: | chr14:35734906-35735202 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 157 |
| Conread position: | 250-528 |
| Cow position: | chr14:44483203-44483474 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 130 |
| Conread position: | 251-546 |
| Cow position: | chr14:17051330-17051031 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 253-415 |
| Cow position: | chr14:25393849-25393684 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 139 |
| Conread position: | 254-441 |
| Cow position: | chr14:12644383-12644575 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 255-544 |
| Cow position: | chr14:30134090-30134390 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 285-488 |
| Cow position: | chr14:15662502-15662708 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 285-551 |
| Cow position: | chr14:30762377-30762122 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 27, 70 |
| Conread position: | 292-551 |
| Cow position: | chr14:3436347-3436106 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 294-584 |
| Cow position: | chr14:38722575-38722287 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 72 |
| Conread position: | 296-551 |
| Cow position: | chr14:25994315-25994571 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 23 |
| Conread position: | 297-475 |
| Cow position: | chr14:9500206-9500377 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 58, 80 |
| Conread position: | 297-554 |
| Cow position: | chr14:25448081-25447843 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 191, 57 |
| Conread position: | 299-545 |
| Cow position: | chr14:32903930-32904177 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 61 |
| Conread position: | 299-559 |
| Cow position: | chr14:19399569-19399308 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 104, 139 |
| Conread position: | 318-584 |
| Cow position: | chr14:36420354-36420624 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 80 |
| Conread position: | 324-562 |
| Cow position: | chr14:38000079-37999845 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 330-551 |
| Cow position: | chr14:3589244-3589459 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 332-572 |
| Cow position: | chr14:35685426-35685669 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 64, 94 |
| Conread position: | 346-488 |
| Cow position: | chr14:44771735-44771595 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 349-565 |
| Cow position: | chr14:17462951-17462733 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 353-546 |
| Cow position: | chr14:44023918-44023725 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 358-545 |
| Cow position: | chr14:38413130-38412943 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 130, 47 |
| Conread position: | 388-551 |
| Cow position: | chr14:29481202-29481368 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 394-554 |
| Cow position: | chr14:5255596-5255434 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 95, 19 |
Show alignments to all cow chromosomes.