Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-305 |
| Cow position: | chr15:5912734-5912437 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 28 |
| Conread position: | 1-371 |
| Cow position: | chr15:9072373-9072779 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-488 |
| Cow position: | chr15:37470273-37469761 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 48 |
| Conread position: | 1-524 |
| Cow position: | chr15:10581090-10581641 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 1-544 |
| Cow position: | chr15:52868521-52869074 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 45 |
| Conread position: | 1-551 |
| Cow position: | chr15:23265474-23266038 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 1-551 |
| Cow position: | chr15:25683378-25683961 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 99 |
| Conread position: | 2-286 |
| Cow position: | chr15:31918279-31917988 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 105, 71 |
| Conread position: | 2-385 |
| Cow position: | chr15:37492001-37491609 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 128, 64 |
| Conread position: | 2-546 |
| Cow position: | chr15:53712528-53713096 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 42 |
| Conread position: | 4-241 |
| Cow position: | chr15:40065627-40065878 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 93, 69 |
| Conread position: | 13-545 |
| Cow position: | chr15:17641905-17642451 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 87 |
| Conread position: | 14-546 |
| Cow position: | chr15:6523729-6523188 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 46 |
| Conread position: | 102-553 |
| Cow position: | chr15:50243103-50243549 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 103-551 |
| Cow position: | chr15:53728486-53728015 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 108-554 |
| Cow position: | chr15:30569950-30570407 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 126-551 |
| Cow position: | chr15:31935340-31935795 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 73 |
| Conread position: | 164-520 |
| Cow position: | chr15:12048888-12048512 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 282 |
| Conread position: | 173-551 |
| Cow position: | chr15:49271818-49272194 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 183-554 |
| Cow position: | chr15:44797378-44796999 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 189-552 |
| Cow position: | chr15:19813612-19813236 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 221-454 |
| Cow position: | chr15:35042311-35042546 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 228-522 |
| Cow position: | chr15:11997685-11997991 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 229-432 |
| Cow position: | chr15:26365352-26365556 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 229-464 |
| Cow position: | chr15:36864623-36864383 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 33, 186 |
| Conread position: | 229-516 |
| Cow position: | chr15:38902517-38902244 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 229-542 |
| Cow position: | chr15:2437052-2437354 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 229-545 |
| Cow position: | chr15:37633305-37633622 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 229-550 |
| Cow position: | chr15:31855406-31855736 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 229-551 |
| Cow position: | chr15:26866790-26867092 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 232-431 |
| Cow position: | chr15:27971832-27971638 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 232-527 |
| Cow position: | chr15:1888014-1888311 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 233-470 |
| Cow position: | chr15:34551868-34552110 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 233-544 |
| Cow position: | chr15:13081267-13081577 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 233-551 |
| Cow position: | chr15:3593503-3593192 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 30, 167 |
| Conread position: | 234-530 |
| Cow position: | chr15:14810988-14810696 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 31, 233 |
| Conread position: | 234-545 |
| Cow position: | chr15:18403876-18404174 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 235-545 |
| Cow position: | chr15:4622818-4622519 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 235-551 |
| Cow position: | chr15:16669484-16669161 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 235-553 |
| Cow position: | chr15:578997-579311 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 164 |
| Conread position: | 236-579 |
| Cow position: | chr15:7443966-7443636 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 242-528 |
| Cow position: | chr15:12283120-12283405 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 245-545 |
| Cow position: | chr15:16972189-16971890 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 245-551 |
| Cow position: | chr15:8630290-8630596 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 216 |
| Conread position: | 245-551 |
| Cow position: | chr15:52131791-52132103 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 126 |
| Conread position: | 248-553 |
| Cow position: | chr15:21802504-21802806 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 15, 71 |
| Conread position: | 249-551 |
| Cow position: | chr15:28608221-28607907 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 106, 35 |
| Conread position: | 253-545 |
| Cow position: | chr15:9437459-9437753 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 146 |
| Conread position: | 262-551 |
| Cow position: | chr15:31883004-31883283 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 125 |
| Conread position: | 276-458 |
| Cow position: | chr15:36582571-36582392 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 279-551 |
| Cow position: | chr15:582825-583107 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 284-449 |
| Cow position: | chr15:39360190-39360019 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 285-520 |
| Cow position: | chr15:9428035-9427786 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 290-560 |
| Cow position: | chr15:16989493-16989764 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 292-565 |
| Cow position: | chr15:5912390-5912105 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 295-543 |
| Cow position: | chr15:39809507-39809761 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 296-551 |
| Cow position: | chr15:11287388-11287123 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 258 |
| Conread position: | 297-488 |
| Cow position: | chr15:1892182-1891991 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 309-551 |
| Cow position: | chr15:40065906-40066152 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 313-521 |
| Cow position: | chr15:53335368-53335587 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 318-551 |
| Cow position: | chr15:21182019-21182257 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 341-529 |
| Cow position: | chr15:6347744-6347940 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 344-573 |
| Cow position: | chr15:31917665-31917440 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 387-559 |
| Cow position: | chr15:41807446-41807270 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 392-569 |
| Cow position: | chr15:9075427-9075603 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 159, 13 |
| Conread position: | 394-551 |
| Cow position: | chr15:36278090-36277932 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 90, 117 |
| Conread position: | 398-551 |
| Cow position: | chr15:35067039-35067195 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 405-547 |
| Cow position: | chr15:1992771-1992915 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 79, 141 |
| Conread position: | 411-551 |
| Cow position: | chr15:37491608-37491472 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 430-551 |
| Cow position: | chr15:27971607-27971484 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 58, 10 |
Show alignments to all cow chromosomes.