Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-213 |
| Cow position: | chr16:13043843-13044062 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 1-223 |
| Cow position: | chr16:15734594-15734817 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 1-229 |
| Cow position: | chr16:45551859-45552080 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 92, 59 |
| Conread position: | 1-235 |
| Cow position: | chr16:4856464-4856223 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 129, 32 |
| Conread position: | 1-338 |
| Cow position: | chr16:52814153-52813831 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 163, 77 |
| Conread position: | 1-372 |
| Cow position: | chr16:17867460-17867076 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 86 |
| Conread position: | 1-545 |
| Cow position: | chr16:41680746-41680174 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 1-545 |
| Cow position: | chr16:43850807-43850241 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 1-551 |
| Cow position: | chr16:53547568-53547024 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 1-556 |
| Cow position: | chr16:23035273-23034700 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 38 |
| Conread position: | 1-557 |
| Cow position: | chr16:22786021-22785445 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 95 |
| Conread position: | 1-579 |
| Cow position: | chr16:4295503-4294911 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 82 |
| Conread position: | 2-543 |
| Cow position: | chr16:47781321-47781888 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 98 |
| Conread position: | 2-545 |
| Cow position: | chr16:30572590-30572039 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 74 |
| Conread position: | 2-576 |
| Cow position: | chr16:14799716-14799122 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 3-230 |
| Cow position: | chr16:36911019-36910783 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 3-298 |
| Cow position: | chr16:19152720-19153047 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 13-551 |
| Cow position: | chr16:16118490-16119053 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 62 |
| Conread position: | 27-356 |
| Cow position: | chr16:31375127-31374780 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 100, 26 |
| Conread position: | 29-524 |
| Cow position: | chr16:15508979-15509497 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 33-347 |
| Cow position: | chr16:14443964-14444294 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 53-568 |
| Cow position: | chr16:53516556-53516038 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 22 |
| Conread position: | 103-407 |
| Cow position: | chr16:47391165-47391477 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 103-568 |
| Cow position: | chr16:5131633-5131172 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 106-230 |
| Cow position: | chr16:37442004-37441877 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 111-407 |
| Cow position: | chr16:42405982-42406309 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 159-551 |
| Cow position: | chr16:48894640-48894232 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 183-545 |
| Cow position: | chr16:27075373-27075749 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 126 |
| Conread position: | 184-439 |
| Cow position: | chr16:43741884-43741633 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 185-552 |
| Cow position: | chr16:23301550-23301926 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 24, 195 |
| Conread position: | 186-559 |
| Cow position: | chr16:26075072-26075452 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 229-567 |
| Cow position: | chr16:2371533-2371209 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 146 |
| Conread position: | 229-568 |
| Cow position: | chr16:23878609-23878972 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 229-584 |
| Cow position: | chr16:12243281-12242924 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 69 |
| Conread position: | 232-515 |
| Cow position: | chr16:17393753-17393471 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 75, 44 |
| Conread position: | 232-551 |
| Cow position: | chr16:52650250-52649925 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 181 |
| Conread position: | 233-531 |
| Cow position: | chr16:25937808-25938096 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 233-557 |
| Cow position: | chr16:45552276-45552598 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 234-404 |
| Cow position: | chr16:16608083-16608255 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 234-544 |
| Cow position: | chr16:3742861-3742539 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 235-569 |
| Cow position: | chr16:13044118-13044458 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 236-555 |
| Cow position: | chr16:45057680-45058006 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 293 |
| Conread position: | 254-563 |
| Cow position: | chr16:56373587-56373278 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 194 |
| Conread position: | 254-567 |
| Cow position: | chr16:43850216-43849910 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 262-542 |
| Cow position: | chr16:30109530-30109250 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 262-551 |
| Cow position: | chr16:48604489-48604209 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 221, 59 |
| Conread position: | 270-540 |
| Cow position: | chr16:37441603-37441331 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 82, 114 |
| Conread position: | 272-471 |
| Cow position: | chr16:37526963-37527162 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 137, 60 |
| Conread position: | 285-494 |
| Cow position: | chr16:608563-608352 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 67, 105 |
| Conread position: | 285-522 |
| Cow position: | chr16:14423224-14423468 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 67, 96 |
| Conread position: | 292-551 |
| Cow position: | chr16:2722719-2722450 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 293-557 |
| Cow position: | chr16:4854635-4854375 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 62, 97 |
| Conread position: | 295-532 |
| Cow position: | chr16:14325332-14325565 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 104 |
| Conread position: | 295-546 |
| Cow position: | chr16:37508416-37508670 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 192 |
| Conread position: | 312-550 |
| Cow position: | chr16:12473986-12474237 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 241 |
| Conread position: | 313-557 |
| Cow position: | chr16:51456672-51456914 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 319-545 |
| Cow position: | chr16:32352472-32352702 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 36, 63 |
| Conread position: | 320-564 |
| Cow position: | chr16:24038450-24038705 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 326-546 |
| Cow position: | chr16:17365451-17365678 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 333-545 |
| Cow position: | chr16:14084781-14084563 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 336-583 |
| Cow position: | chr16:31374536-31374280 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 337-474 |
| Cow position: | chr16:29204515-29204375 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 118 |
| Conread position: | 342-545 |
| Cow position: | chr16:14444556-14444760 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 360-533 |
| Cow position: | chr16:19445998-19446165 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 131, 45 |
| Conread position: | 361-570 |
| Cow position: | chr16:34563697-34563491 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 105 |
| Conread position: | 361-570 |
| Cow position: | chr16:52813519-52813322 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 406-565 |
| Cow position: | chr16:26106598-26106759 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 408-567 |
| Cow position: | chr16:37024803-37024643 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 69, 84 |
| Conread position: | 412-551 |
| Cow position: | chr16:10198441-10198584 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 438-588 |
| Cow position: | chr16:14824504-14824349 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 33 |
Show alignments to all cow chromosomes.