Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-344 |
| Cow position: | chr17:24608882-24609253 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 1-424 |
| Cow position: | chr17:20208764-20208311 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 1-503 |
| Cow position: | chr17:30358444-30357963 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 37 |
| Conread position: | 1-573 |
| Cow position: | chr17:28847598-28846990 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 72 |
| Conread position: | 1-579 |
| Cow position: | chr17:1310193-1309617 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 2-294 |
| Cow position: | chr17:13236634-13236324 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 2-417 |
| Cow position: | chr17:25117032-25117466 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 39 |
| Conread position: | 2-532 |
| Cow position: | chr17:701468-702010 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 73 |
| Conread position: | 106-557 |
| Cow position: | chr17:32451506-32451015 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 225 |
| Conread position: | 165-544 |
| Cow position: | chr17:19789632-19789252 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 207-587 |
| Cow position: | chr17:13703577-13703961 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 27, 79 |
| Conread position: | 210-557 |
| Cow position: | chr17:2736005-2736355 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 229-545 |
| Cow position: | chr17:12842566-12842892 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 36, 235 |
| Conread position: | 229-551 |
| Cow position: | chr17:18417936-18417602 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 78 |
| Conread position: | 229-551 |
| Cow position: | chr17:27622602-27622281 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 168 |
| Conread position: | 230-489 |
| Cow position: | chr17:3849037-3849298 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 34, 217 |
| Conread position: | 230-545 |
| Cow position: | chr17:7210930-7211240 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 234-502 |
| Cow position: | chr17:30330647-30330899 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 245-547 |
| Cow position: | chr17:11225507-11225812 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 280-542 |
| Cow position: | chr17:15450853-15451115 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 224 |
| Conread position: | 286-564 |
| Cow position: | chr17:17500988-17500719 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 204, 62 |
| Conread position: | 287-555 |
| Cow position: | chr17:3223724-3223985 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 46 |
| Conread position: | 296-560 |
| Cow position: | chr17:37722764-37722508 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 57, 102 |
| Conread position: | 313-544 |
| Cow position: | chr17:33271390-33271154 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 318-585 |
| Cow position: | chr17:12306578-12306847 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 148, 25 |
| Conread position: | 320-573 |
| Cow position: | chr17:10850953-10850700 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 33, 71 |
| Conread position: | 321-579 |
| Cow position: | chr17:404254-404527 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 342-551 |
| Cow position: | chr17:43143377-43143157 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 8, 149 |
| Conread position: | 348-579 |
| Cow position: | chr17:4625191-4625421 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 351-543 |
| Cow position: | chr17:10261544-10261735 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 37 |
| Conread position: | 351-554 |
| Cow position: | chr17:41899173-41898968 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 133, 42 |
| Conread position: | 352-551 |
| Cow position: | chr17:26481252-26481455 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 164 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 50, 182 |
| Conread position: | 377-543 |
| Cow position: | chr17:19447335-19447164 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 157 |
| Conread position: | 390-550 |
| Cow position: | chr17:13235977-13236144 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 405-552 |
| Cow position: | chr17:26630727-26630578 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 54 |
| Conread position: | 408-564 |
| Cow position: | chr17:25117561-25117720 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 437-551 |
| Cow position: | chr17:3797789-3797906 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.