Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-231 |
| Cow position: | chr18:8170177-8170405 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 96, 36 |
| Conread position: | 1-487 |
| Cow position: | chr18:29224684-29225173 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 72 |
| Conread position: | 1-545 |
| Cow position: | chr18:28085563-28086133 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 38 |
| Conread position: | 1-551 |
| Cow position: | chr18:32860648-32861212 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 63 |
| Conread position: | 1-568 |
| Cow position: | chr18:22065356-22064801 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 74 |
| Conread position: | 12-230 |
| Cow position: | chr18:8204529-8204750 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 99-433 |
| Cow position: | chr18:35471716-35471355 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 100-559 |
| Cow position: | chr18:22433701-22433218 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 210 |
| Conread position: | 103-551 |
| Cow position: | chr18:1700683-1701144 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 263 |
| Conread position: | 105-551 |
| Cow position: | chr18:39475167-39474705 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 110-553 |
| Cow position: | chr18:27404992-27405448 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 144 |
| Conread position: | 113-568 |
| Cow position: | chr18:23316671-23316216 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 293 |
| Conread position: | 126-544 |
| Cow position: | chr18:25846909-25846482 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 81 |
| Conread position: | 197-420 |
| Cow position: | chr18:26667336-26667578 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 213-544 |
| Cow position: | chr18:29043221-29042905 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 217-513 |
| Cow position: | chr18:53028941-53029228 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 15, 70 |
| Conread position: | 222-515 |
| Cow position: | chr18:5060325-5060009 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 229-371 |
| Cow position: | chr18:21290538-21290393 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 229-390 |
| Cow position: | chr18:16539148-16539312 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 229-409 |
| Cow position: | chr18:33896074-33896257 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 162 |
| Conread position: | 229-550 |
| Cow position: | chr18:53047822-53047497 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 274 |
| Conread position: | 229-551 |
| Cow position: | chr18:24664206-24663886 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 231-381 |
| Cow position: | chr18:37493293-37493445 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 233-550 |
| Cow position: | chr18:16259500-16259826 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 235-390 |
| Cow position: | chr18:17009330-17009490 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 235-540 |
| Cow position: | chr18:17228017-17227715 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 236-551 |
| Cow position: | chr18:29081256-29081573 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 119, 179 |
| Conread position: | 251-558 |
| Cow position: | chr18:50880738-50881057 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 263-578 |
| Cow position: | chr18:21123250-21122942 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 275-444 |
| Cow position: | chr18:33146889-33147063 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 285-542 |
| Cow position: | chr18:50242349-50242610 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 74, 89 |
| Conread position: | 285-571 |
| Cow position: | chr18:26866121-26866417 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 301-551 |
| Cow position: | chr18:48952573-48952825 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 94, 54 |
| Conread position: | 303-560 |
| Cow position: | chr18:49436659-49436924 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 320-553 |
| Cow position: | chr18:19213551-19213297 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 331-487 |
| Cow position: | chr18:55748936-55748775 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 331-541 |
| Cow position: | chr18:1129237-1129443 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 334-505 |
| Cow position: | chr18:8170758-8170936 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 17, 90 |
| Conread position: | 339-529 |
| Cow position: | chr18:51331939-51332133 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 345-551 |
| Cow position: | chr18:32371761-32371562 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 350-546 |
| Cow position: | chr18:36456395-36456595 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 351-570 |
| Cow position: | chr18:12078747-12078521 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 351-575 |
| Cow position: | chr18:52870968-52871190 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 140, 33 |
| Conread position: | 383-566 |
| Cow position: | chr18:1195866-1196047 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 398-544 |
| Cow position: | chr18:1740714-1740566 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 405-540 |
| Cow position: | chr18:26667694-26667826 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 412-513 |
| Cow position: | chr18:31394189-31394292 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 421-555 |
| Cow position: | chr18:35471134-35470995 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 421-569 |
| Cow position: | chr18:32286652-32286801 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 63 |
Show alignments to all cow chromosomes.