Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-247 |
| Cow position: | chr19:20700093-20700350 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 1-281 |
| Cow position: | chr19:36478909-36479198 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 96, 32 |
| Conread position: | 1-338 |
| Cow position: | chr19:33285291-33284928 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 72 |
| Conread position: | 1-361 |
| Cow position: | chr19:14534634-14534283 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 10, 68 |
| Conread position: | 1-422 |
| Cow position: | chr19:3082096-3082531 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 67 |
| Conread position: | 1-546 |
| Cow position: | chr19:30051982-30051432 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 72 |
| Conread position: | 1-569 |
| Cow position: | chr19:30746419-30747024 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 100 |
| Conread position: | 1-570 |
| Cow position: | chr19:426257-425702 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 397 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 101, 72 |
| Conread position: | 3-289 |
| Cow position: | chr19:4609875-4610166 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 94, 41 |
| Conread position: | 7-481 |
| Cow position: | chr19:19242116-19242590 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 24 |
| Conread position: | 102-543 |
| Cow position: | chr19:25846439-25846881 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 103-545 |
| Cow position: | chr19:17439973-17439535 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 103-551 |
| Cow position: | chr19:30350110-30349652 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 232 |
| Conread position: | 175-468 |
| Cow position: | chr19:22670669-22670362 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 206 |
| Conread position: | 228-446 |
| Cow position: | chr19:51070622-51070406 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 90 |
| Conread position: | 229-466 |
| Cow position: | chr19:49484009-49484249 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 30, 149 |
| Conread position: | 229-513 |
| Cow position: | chr19:30188533-30188236 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 229-571 |
| Cow position: | chr19:47772267-47772626 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 230-567 |
| Cow position: | chr19:28560557-28560210 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 99 |
| Conread position: | 236-528 |
| Cow position: | chr19:10112763-10113045 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 236-551 |
| Cow position: | chr19:4600772-4601087 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 236-551 |
| Cow position: | chr19:6362549-6362869 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 236-551 |
| Cow position: | chr19:55898309-55898619 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 250-551 |
| Cow position: | chr19:28606078-28605769 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 252-404 |
| Cow position: | chr19:33954974-33955126 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 252-583 |
| Cow position: | chr19:30880097-30880436 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 253-550 |
| Cow position: | chr19:36388643-36388358 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 10 |
| Conread position: | 276-551 |
| Cow position: | chr19:41504271-41504552 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 285-527 |
| Cow position: | chr19:13448474-13448724 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 285-540 |
| Cow position: | chr19:46189153-46188910 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 70, 121 |
| Conread position: | 291-494 |
| Cow position: | chr19:50843594-50843786 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 296-544 |
| Cow position: | chr19:6478494-6478237 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 297-551 |
| Cow position: | chr19:55418382-55418629 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 180, 73 |
| Conread position: | 303-545 |
| Cow position: | chr19:30451701-30451472 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 312-521 |
| Cow position: | chr19:35026831-35026617 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 142 |
| Conread position: | 319-550 |
| Cow position: | chr19:33590058-33590304 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 351-552 |
| Cow position: | chr19:30385148-30385354 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 52, 112 |
| Conread position: | 351-567 |
| Cow position: | chr19:17282590-17282368 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 203 |
| Conread position: | 357-545 |
| Cow position: | chr19:14534093-14533901 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 369-551 |
| Cow position: | chr19:39299502-39299314 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 124 |
| Conread position: | 374-544 |
| Cow position: | chr19:35826802-35826978 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 380-566 |
| Cow position: | chr19:12478143-12477944 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 386-544 |
| Cow position: | chr19:33955175-33955337 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 396-545 |
| Cow position: | chr19:3082526-3082677 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 405-570 |
| Cow position: | chr19:41554696-41554857 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 29 |
| Conread position: | 408-556 |
| Cow position: | chr19:33847809-33847962 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 434-569 |
| Cow position: | chr19:51070079-51069946 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.