Cow genome map

Conread name: Ss1.1-Pig2-119N20.5

Conread position: 1-143
Cow position: chr2:19749628-19749770 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 101, 72

Conread position: 1-210
Cow position: chr2:20301976-20302180 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 126, 83

Conread position: 1-215
Cow position: chr2:46141143-46140929 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 94, 99

Conread position: 1-248
Cow position: chr2:76055533-76055281 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 79, 44

Conread position: 1-416
Cow position: chr2:62674217-62673796 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 1-437
Cow position: chr2:77968479-77968028 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 99

Conread position: 1-506
Cow position: chr2:53716959-53716436 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 74

Conread position: 1-513
Cow position: chr2:41490670-41491201 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 45

Conread position: 1-515
Cow position: chr2:32393436-32393947 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 71

Conread position: 1-551
Cow position: chr2:33791457-33790886 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 99

Conread position: 1-551
Cow position: chr2:63288128-63287559 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 33

Conread position: 1-553
Cow position: chr2:74388098-74387529 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 11

Conread position: 1-561
Cow position: chr2:72598827-72599421 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 73

Conread position: 2-544
Cow position: chr2:7211817-7212382 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 14

Conread position: 2-562
Cow position: chr2:43345268-43344679 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 36

Conread position: 3-425
Cow position: chr2:71121051-71121483 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 298
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 124, 60

Conread position: 4-544
Cow position: chr2:69982444-69982945 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 62

Conread position: 7-214
Cow position: chr2:50017552-50017345 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 74, 15

Conread position: 18-554
Cow position: chr2:31420047-31420600 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 15

Conread position: 27-330
Cow position: chr2:18249835-18249510 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 227
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 68, 48

Conread position: 73-545
Cow position: chr2:14037616-14037134 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 22

Conread position: 101-552
Cow position: chr2:3182381-3181919 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 27

Conread position: 103-456
Cow position: chr2:54890414-54890761 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 238
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 92, 7

Conread position: 106-545
Cow position: chr2:39196651-39196197 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 326
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 21, 210

Conread position: 106-551
Cow position: chr2:82828247-82827783 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 16

Conread position: 138-366
Cow position: chr2:37003456-37003707 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 28, 61

Conread position: 172-544
Cow position: chr2:4927870-4927487 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 277
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 20, 34

Conread position: 187-551
Cow position: chr2:52347546-52347179 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 25

Conread position: 190-419
Cow position: chr2:37955656-37955881 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 14

Conread position: 218-554
Cow position: chr2:11736664-11736999 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 229
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 125

Conread position: 227-550
Cow position: chr2:56823068-56822738 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 36, 88

Conread position: 228-466
Cow position: chr2:33391505-33391281 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 53

Conread position: 228-475
Cow position: chr2:20281756-20282012 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 35, 196

Conread position: 228-475
Cow position: chr2:57501503-57501747 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 35, 59

Conread position: 229-438
Cow position: chr2:42286227-42286017 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 123, 59

Conread position: 229-543
Cow position: chr2:13048487-13048795 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 115

Conread position: 229-545
Cow position: chr2:21697449-21697136 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 135

Conread position: 229-550
Cow position: chr2:68962823-68962515 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 34, 59

Conread position: 229-553
Cow position: chr2:9043469-9043792 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 34, 106

Conread position: 229-554
Cow position: chr2:74848115-74848467 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 246
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 42, 58

Conread position: 231-543
Cow position: chr2:62463731-62463404 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 60

Conread position: 231-551
Cow position: chr2:7779206-7778891 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 241
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 32, 21

Conread position: 232-514
Cow position: chr2:80604059-80603768 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 255

Conread position: 232-520
Cow position: chr2:39411915-39412213 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 171

Conread position: 232-542
Cow position: chr2:80824309-80823997 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 209
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 30, 63

Conread position: 232-564
Cow position: chr2:3544325-3543990 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 240
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 125, 21

Conread position: 233-428
Cow position: chr2:40680085-40680279 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 30, 22

Conread position: 233-566
Cow position: chr2:47746506-47746830 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 42

Conread position: 234-551
Cow position: chr2:23811406-23811695 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 85

Conread position: 234-566
Cow position: chr2:4478068-4478411 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 29, 299

Conread position: 235-551
Cow position: chr2:5716349-5716650 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 28, 48

Conread position: 235-568
Cow position: chr2:23062641-23062310 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 91

Conread position: 236-399
Cow position: chr2:3628199-3628033 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 118, 0

Conread position: 240-579
Cow position: chr2:5767756-5767431 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 245
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 23, 41

Conread position: 245-568
Cow position: chr2:18274380-18274051 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 25

Conread position: 251-551
Cow position: chr2:7365929-7365628 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 24

Conread position: 252-543
Cow position: chr2:40370473-40370191 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 138

Conread position: 260-578
Cow position: chr2:24825475-24825780 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 226
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 23, 145

Conread position: 262-551
Cow position: chr2:18759797-18760079 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 27, 77

Conread position: 262-556
Cow position: chr2:52183256-52183549 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 16

Conread position: 262-570
Cow position: chr2:13684901-13685206 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 19

Conread position: 268-505
Cow position: chr2:44983361-44983117 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 11, 27

Conread position: 272-448
Cow position: chr2:76055077-76054902 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 87, 11

Conread position: 274-545
Cow position: chr2:38806032-38805761 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 79, 10

Conread position: 281-565
Cow position: chr2:19750654-19750940 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 74, 11

Conread position: 285-551
Cow position: chr2:41417907-41417642 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 22, 90

Conread position: 286-555
Cow position: chr2:12777244-12776977 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 90

Conread position: 292-551
Cow position: chr2:46130601-46130335 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 55, 149

Conread position: 295-557
Cow position: chr2:49441169-49441430 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 56, 17

Conread position: 296-507
Cow position: chr2:3730445-3730660 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 171
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 59, 79

Conread position: 297-500
Cow position: chr2:38583586-38583376 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 59, 82

Conread position: 298-550
Cow position: chr2:27782842-27782579 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 57, 71

Conread position: 301-529
Cow position: chr2:19130497-19130722 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 187, 104

Conread position: 312-579
Cow position: chr2:9709815-9710090 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 43, 112

Conread position: 315-457
Cow position: chr2:8195924-8195785 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 111, 56

Conread position: 318-528
Cow position: chr2:33823261-33823061 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 176, 66

Conread position: 319-488
Cow position: chr2:18249248-18249085 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 33, 60

Conread position: 320-527
Cow position: chr2:47962619-47962419 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 44

Conread position: 336-544
Cow position: chr2:51826787-51826585 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 29

Conread position: 344-551
Cow position: chr2:25112522-25112728 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 139, 61

Conread position: 354-544
Cow position: chr2:53280772-53280971 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 358-541
Cow position: chr2:20534229-20534042 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 79, 165

Conread position: 359-553
Cow position: chr2:73205034-73204834 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 361-546
Cow position: chr2:43000883-43000702 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 31

Conread position: 374-545
Cow position: chr2:78912391-78912216 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 74

Conread position: 395-568
Cow position: chr2:16522039-16522213 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 93, 13

Conread position: 397-545
Cow position: chr2:59592565-59592415 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 87, 13

Conread position: 405-551
Cow position: chr2:36213904-36213756 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 79, 104

Conread position: 412-551
Cow position: chr2:71121693-71121835 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 417-544
Cow position: chr2:37155547-37155419 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 72, 0

Show alignments to all cow chromosomes.