Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-248 |
| Cow position: | chr20:20350925-20350675 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 1-316 |
| Cow position: | chr20:16585565-16585229 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 1-487 |
| Cow position: | chr20:24280035-24280533 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 1-578 |
| Cow position: | chr20:31563908-31563312 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 2-326 |
| Cow position: | chr20:2858410-2858724 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 125, 84 |
| Conread position: | 2-499 |
| Cow position: | chr20:35249524-35249001 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 103 |
| Conread position: | 3-237 |
| Cow position: | chr20:17474717-17474472 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 3-243 |
| Cow position: | chr20:25293663-25293906 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 94, 70 |
| Conread position: | 3-432 |
| Cow position: | chr20:27977636-27977186 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 7-407 |
| Cow position: | chr20:4851227-4851661 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 7-545 |
| Cow position: | chr20:13589086-13588521 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 30-568 |
| Cow position: | chr20:15147891-15147338 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 43 |
| Conread position: | 106-430 |
| Cow position: | chr20:36707291-36706943 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 125-366 |
| Cow position: | chr20:26992959-26993226 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 125-504 |
| Cow position: | chr20:10722525-10722903 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 210-545 |
| Cow position: | chr20:14864566-14864236 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 71 |
| Conread position: | 212-566 |
| Cow position: | chr20:22420500-22420149 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 217-568 |
| Cow position: | chr20:5668487-5668121 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 229 |
| Conread position: | 229-545 |
| Cow position: | chr20:33154665-33154347 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 231-468 |
| Cow position: | chr20:9918780-9919027 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 32, 168 |
| Conread position: | 232-516 |
| Cow position: | chr20:21847586-21847314 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 233-488 |
| Cow position: | chr20:27844334-27844603 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 169 |
| Conread position: | 233-545 |
| Cow position: | chr20:21002227-21001918 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 132 |
| Conread position: | 234-527 |
| Cow position: | chr20:13790312-13790612 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 122 |
| Conread position: | 236-537 |
| Cow position: | chr20:4874865-4874559 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 168 |
| Conread position: | 244-541 |
| Cow position: | chr20:3376980-3376676 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 249-532 |
| Cow position: | chr20:31098043-31098328 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 249-556 |
| Cow position: | chr20:22919819-22919515 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 250-579 |
| Cow position: | chr20:20350454-20350123 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 63 |
| Conread position: | 251-551 |
| Cow position: | chr20:21415329-21415026 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 195 |
| Conread position: | 270-438 |
| Cow position: | chr20:28617750-28617584 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 122 |
| Conread position: | 270-545 |
| Cow position: | chr20:23422006-23421731 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 183 |
| Conread position: | 272-560 |
| Cow position: | chr20:30285722-30286011 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 285-543 |
| Cow position: | chr20:887285-887558 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 295-553 |
| Cow position: | chr20:21403552-21403813 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 296-513 |
| Cow position: | chr20:7284237-7284456 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 307-556 |
| Cow position: | chr20:36988203-36987949 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 51 |
| Conread position: | 307-579 |
| Cow position: | chr20:23400675-23400943 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 130 |
| Conread position: | 313-544 |
| Cow position: | chr20:2858742-2858971 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 42, 88 |
| Conread position: | 313-568 |
| Cow position: | chr20:7801730-7801480 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 319-504 |
| Cow position: | chr20:20072147-20071953 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 334-541 |
| Cow position: | chr20:20064237-20064023 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 108 |
| Conread position: | 340-563 |
| Cow position: | chr20:33601912-33601684 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 153 |
| Conread position: | 342-551 |
| Cow position: | chr20:30243644-30243843 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 351-550 |
| Cow position: | chr20:36373832-36373625 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 351-552 |
| Cow position: | chr20:21301030-21300827 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 354-545 |
| Cow position: | chr20:17473153-17472959 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 89 |
| Conread position: | 354-553 |
| Cow position: | chr20:16582845-16582645 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 123, 34 |
| Conread position: | 392-564 |
| Cow position: | chr20:12118537-12118354 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 412-551 |
| Cow position: | chr20:4851792-4851933 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 78, 50 |
| Conread position: | 413-584 |
| Cow position: | chr20:15492284-15492457 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 77, 161 |
| Conread position: | 414-546 |
| Cow position: | chr20:8982727-8982592 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 421-566 |
| Cow position: | chr20:9071389-9071240 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 143 |
| Conread position: | 423-578 |
| Cow position: | chr20:27976960-27976805 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 132 |
Show alignments to all cow chromosomes.