Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-230 |
| Cow position: | chr21:24944809-24944568 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 72 |
| Conread position: | 1-235 |
| Cow position: | chr21:33974579-33974818 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 72 |
| Conread position: | 1-438 |
| Cow position: | chr21:25018951-25019403 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 1-449 |
| Cow position: | chr21:37355763-37356212 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 329 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 1-504 |
| Cow position: | chr21:23399040-23399578 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 1-545 |
| Cow position: | chr21:17672246-17671733 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 19 |
| Conread position: | 1-545 |
| Cow position: | chr21:26632357-26631811 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 12 |
| Conread position: | 1-549 |
| Cow position: | chr21:24972519-24971972 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 1-550 |
| Cow position: | chr21:45447675-45448239 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 1-572 |
| Cow position: | chr21:16166554-16165974 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 117, 71 |
| Conread position: | 2-543 |
| Cow position: | chr21:15543864-15543306 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 3-547 |
| Cow position: | chr21:1991374-1991931 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 73 |
| Conread position: | 103-474 |
| Cow position: | chr21:16678994-16679363 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 130 |
| Conread position: | 125-417 |
| Cow position: | chr21:7724739-7724446 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 143-432 |
| Cow position: | chr21:37941272-37940967 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 23, 122 |
| Conread position: | 165-543 |
| Cow position: | chr21:22941632-22942024 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 184-436 |
| Cow position: | chr21:3614307-3614568 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 25, 128 |
| Conread position: | 220-351 |
| Cow position: | chr21:8273214-8273085 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 229-509 |
| Cow position: | chr21:12756265-12756551 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 229-553 |
| Cow position: | chr21:26742170-26741866 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 52 |
| Conread position: | 229-554 |
| Cow position: | chr21:45962729-45963060 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 159 |
| Conread position: | 229-556 |
| Cow position: | chr21:6667531-6667852 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 142 |
| Conread position: | 232-450 |
| Cow position: | chr21:37341822-37341593 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 233-541 |
| Cow position: | chr21:9976504-9976830 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 233-585 |
| Cow position: | chr21:39075143-39074789 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 236-579 |
| Cow position: | chr21:23286303-23285961 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 237-514 |
| Cow position: | chr21:26579643-26579923 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 21 |
| Conread position: | 249-526 |
| Cow position: | chr21:29644009-29643717 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 16, 121 |
| Conread position: | 250-531 |
| Cow position: | chr21:27521067-27520771 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 120 |
| Conread position: | 262-482 |
| Cow position: | chr21:5994613-5994395 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 92, 22 |
| Conread position: | 267-551 |
| Cow position: | chr21:38021267-38021549 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 276-551 |
| Cow position: | chr21:30567587-30567314 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 7 |
| Conread position: | 285-545 |
| Cow position: | chr21:12079603-12079863 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 295-553 |
| Cow position: | chr21:37282920-37283173 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 304-569 |
| Cow position: | chr21:42396388-42396657 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 324-569 |
| Cow position: | chr21:37170181-37170439 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 62, 179 |
| Conread position: | 329-514 |
| Cow position: | chr21:33975069-33975266 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 342-551 |
| Cow position: | chr21:27089519-27089296 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 199 |
| Conread position: | 350-571 |
| Cow position: | chr21:27678467-27678689 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 351-551 |
| Cow position: | chr21:6282382-6282577 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 139, 37 |
| Conread position: | 375-569 |
| Cow position: | chr21:28650820-28651019 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 31, 169 |
| Conread position: | 391-540 |
| Cow position: | chr21:45286280-45286133 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 398-553 |
| Cow position: | chr21:39527386-39527542 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 400-569 |
| Cow position: | chr21:454819-454987 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 145, 75 |
| Conread position: | 422-550 |
| Cow position: | chr21:25019523-25019654 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 422-569 |
| Cow position: | chr21:5588907-5588756 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 422-569 |
| Cow position: | chr21:5597872-5598015 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 426-535 |
| Cow position: | chr21:3614619-3614728 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.