Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-218 |
| Cow position: | chr23:15694385-15694601 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 1-376 |
| Cow position: | chr23:5265488-5265098 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 73, 64 |
| Conread position: | 1-513 |
| Cow position: | chr23:23285147-23285647 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 84 |
| Conread position: | 1-551 |
| Cow position: | chr23:16170735-16171317 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 2-551 |
| Cow position: | chr23:25408858-25409412 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 73 |
| Conread position: | 3-151 |
| Cow position: | chr23:23916611-23916760 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 39, 71 |
| Conread position: | 3-341 |
| Cow position: | chr23:7253094-7253466 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 7-412 |
| Cow position: | chr23:20216911-20217327 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 120, 13 |
| Conread position: | 12-551 |
| Cow position: | chr23:25079145-25078611 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 29 |
| Conread position: | 103-407 |
| Cow position: | chr23:206025-206312 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 104-569 |
| Cow position: | chr23:39070096-39069603 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 106-551 |
| Cow position: | chr23:36674643-36674181 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 220 |
| Conread position: | 110-353 |
| Cow position: | chr23:9724893-9724639 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 190 |
| Conread position: | 165-416 |
| Cow position: | chr23:38026494-38026222 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 121 |
| Conread position: | 187-428 |
| Cow position: | chr23:1250876-1250636 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 97 |
| Conread position: | 228-551 |
| Cow position: | chr23:23917143-23917473 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 75 |
| Conread position: | 229-543 |
| Cow position: | chr23:5258614-5258920 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 41 |
| Conread position: | 229-545 |
| Cow position: | chr23:16479636-16479311 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 230 |
| Conread position: | 229-551 |
| Cow position: | chr23:2784112-2783781 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 187 |
| Conread position: | 229-552 |
| Cow position: | chr23:22605690-22605378 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 55 |
| Conread position: | 231-348 |
| Cow position: | chr23:14752342-14752226 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 232-407 |
| Cow position: | chr23:6964070-6963905 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 232-487 |
| Cow position: | chr23:30302130-30301872 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 48 |
| Conread position: | 232-558 |
| Cow position: | chr23:24400916-24400577 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 235-543 |
| Cow position: | chr23:9546666-9546970 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 140 |
| Conread position: | 237-572 |
| Cow position: | chr23:15147721-15147390 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 245-547 |
| Cow position: | chr23:39822752-39823056 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 285-522 |
| Cow position: | chr23:14572736-14572964 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 117, 55 |
| Conread position: | 294-542 |
| Cow position: | chr23:30691688-30691440 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 158 |
| Conread position: | 295-550 |
| Cow position: | chr23:36484086-36483838 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 296-541 |
| Cow position: | chr23:7571325-7571082 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 93, 30 |
| Conread position: | 299-550 |
| Cow position: | chr23:34514547-34514293 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 150 |
| Conread position: | 299-560 |
| Cow position: | chr23:35654714-35654448 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 97, 56 |
| Conread position: | 300-545 |
| Cow position: | chr23:36347919-36348160 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 315-471 |
| Cow position: | chr23:32869432-32869274 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 94, 58 |
| Conread position: | 318-542 |
| Cow position: | chr23:32845658-32845433 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 319-511 |
| Cow position: | chr23:7253587-7253771 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 320-550 |
| Cow position: | chr23:1682433-1682664 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 170, 68 |
| Conread position: | 324-546 |
| Cow position: | chr23:2330412-2330191 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 327-488 |
| Cow position: | chr23:15694244-15694076 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 158 |
| Conread position: | 333-545 |
| Cow position: | chr23:20023841-20024058 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 336-545 |
| Cow position: | chr23:9425831-9425617 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 20, 70 |
| Conread position: | 342-551 |
| Cow position: | chr23:37036470-37036267 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 343-584 |
| Cow position: | chr23:14752006-14751774 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 87, 54 |
| Conread position: | 351-551 |
| Cow position: | chr23:30127350-30127153 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 354-522 |
| Cow position: | chr23:16748274-16748103 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 392-550 |
| Cow position: | chr23:9724012-9723855 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 91 |
| Conread position: | 405-551 |
| Cow position: | chr23:5265097-5264955 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 405-571 |
| Cow position: | chr23:6963726-6963564 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 79 |
Show alignments to all cow chromosomes.