Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-192 |
| Cow position: | chr25:10013412-10013218 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 1-224 |
| Cow position: | chr25:18644055-18643821 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 1-233 |
| Cow position: | chr25:14279284-14279519 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 1-530 |
| Cow position: | chr25:18206283-18205745 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 1-551 |
| Cow position: | chr25:16240576-16240029 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 102-496 |
| Cow position: | chr25:36235697-36235289 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 200 |
| Conread position: | 198-550 |
| Cow position: | chr25:20457562-20457220 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 11, 88 |
| Conread position: | 201-543 |
| Cow position: | chr25:8618187-8617838 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 229-541 |
| Cow position: | chr25:16940592-16940272 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 55 |
| Conread position: | 229-545 |
| Cow position: | chr25:13704278-13704599 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 229-551 |
| Cow position: | chr25:19686487-19686158 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 152 |
| Conread position: | 229-554 |
| Cow position: | chr25:13123483-13123810 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 232-470 |
| Cow position: | chr25:23559626-23559384 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 232-551 |
| Cow position: | chr25:23014428-23014740 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 139 |
| Conread position: | 233-513 |
| Cow position: | chr25:5567483-5567186 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 107 |
| Conread position: | 234-507 |
| Cow position: | chr25:38358364-38358630 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 30, 104 |
| Conread position: | 236-482 |
| Cow position: | chr25:16193258-16193012 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 236-527 |
| Cow position: | chr25:13486618-13486895 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 164, 29 |
| Conread position: | 236-535 |
| Cow position: | chr25:17472934-17473236 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 156 |
| Conread position: | 240-570 |
| Cow position: | chr25:11526740-11526427 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 242-557 |
| Cow position: | chr25:34159668-34159344 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 244-572 |
| Cow position: | chr25:20180752-20181081 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 19, 169 |
| Conread position: | 246-551 |
| Cow position: | chr25:5377358-5377055 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 248-544 |
| Cow position: | chr25:14279730-14280019 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 249-482 |
| Cow position: | chr25:30036035-30036272 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 61 |
| Conread position: | 289-551 |
| Cow position: | chr25:10010225-10009969 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 307-482 |
| Cow position: | chr25:35038088-35037914 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 307-541 |
| Cow position: | chr25:20497139-20497367 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 319-551 |
| Cow position: | chr25:33345996-33346220 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 37, 128 |
| Conread position: | 320-482 |
| Cow position: | chr25:16429411-16429242 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 327-551 |
| Cow position: | chr25:13216140-13216364 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 82, 61 |
| Conread position: | 336-546 |
| Cow position: | chr25:20624173-20624390 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 343-545 |
| Cow position: | chr25:15564568-15564768 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 145, 60 |
| Conread position: | 345-544 |
| Cow position: | chr25:9785670-9785461 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 12, 188 |
| Conread position: | 351-547 |
| Cow position: | chr25:16687721-16687523 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 107 |
| Conread position: | 353-547 |
| Cow position: | chr25:8447850-8448038 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 131, 86 |
| Conread position: | 353-569 |
| Cow position: | chr25:20423261-20423482 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 357-524 |
| Cow position: | chr25:28008006-28007833 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 134 |
| Conread position: | 421-561 |
| Cow position: | chr25:18666031-18666168 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 126, 29 |
Show alignments to all cow chromosomes.