Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-161 |
| Cow position: | chr27:9184560-9184395 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 1-163 |
| Cow position: | chr27:5530685-5530524 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 113, 72 |
| Conread position: | 1-541 |
| Cow position: | chr27:3934751-3935338 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 1-555 |
| Cow position: | chr27:9261764-9261174 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 13-554 |
| Cow position: | chr27:30888974-30889530 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 28 |
| Conread position: | 101-488 |
| Cow position: | chr27:11935540-11935118 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 84 |
| Conread position: | 103-565 |
| Cow position: | chr27:26091569-26092064 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 209 |
| Conread position: | 104-545 |
| Cow position: | chr27:13860775-13861203 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 116 |
| Conread position: | 166-543 |
| Cow position: | chr27:17564800-17564401 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 167-529 |
| Cow position: | chr27:23926083-23926452 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 124 |
| Conread position: | 227-554 |
| Cow position: | chr27:31238302-31238625 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 177, 34 |
| Conread position: | 229-345 |
| Cow position: | chr27:18573725-18573608 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 68 |
| Conread position: | 229-449 |
| Cow position: | chr27:11755789-11756001 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 125, 22 |
| Conread position: | 229-543 |
| Cow position: | chr27:2246681-2246372 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 145 |
| Conread position: | 231-569 |
| Cow position: | chr27:18589428-18589090 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 167 |
| Conread position: | 232-452 |
| Cow position: | chr27:6534374-6534593 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 232-532 |
| Cow position: | chr27:4449640-4449932 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 31, 48 |
| Conread position: | 235-579 |
| Cow position: | chr27:4962465-4962798 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 237-571 |
| Cow position: | chr27:29611229-29610910 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 26, 21 |
| Conread position: | 239-551 |
| Cow position: | chr27:11021435-11021130 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 250-396 |
| Cow position: | chr27:5261494-5261345 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 251-555 |
| Cow position: | chr27:18057170-18056860 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 253-535 |
| Cow position: | chr27:1540615-1540877 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 262-423 |
| Cow position: | chr27:280960-281124 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 92, 118 |
| Conread position: | 267-531 |
| Cow position: | chr27:15211413-15211136 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 292-475 |
| Cow position: | chr27:11232804-11232643 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 297-550 |
| Cow position: | chr27:7860143-7860402 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 319-525 |
| Cow position: | chr27:12547767-12547980 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 319-553 |
| Cow position: | chr27:31376198-31375963 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 36, 138 |
| Conread position: | 321-551 |
| Cow position: | chr27:18179078-18179314 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 34, 134 |
| Conread position: | 327-544 |
| Cow position: | chr27:18573484-18573263 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 330-569 |
| Cow position: | chr27:31524125-31523882 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 125 |
| Conread position: | 332-551 |
| Cow position: | chr27:4921870-4922094 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 337-551 |
| Cow position: | chr27:18546497-18546289 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 368-547 |
| Cow position: | chr27:12000118-12000302 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 413-545 |
| Cow position: | chr27:7183806-7183942 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.