Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-235 |
| Cow position: | chr28:15915223-15914983 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 126, 98 |
| Conread position: | 1-393 |
| Cow position: | chr28:22855322-22855712 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 284 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 1-545 |
| Cow position: | chr28:2340564-2341131 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 94 |
| Conread position: | 1-550 |
| Cow position: | chr28:28630600-28631161 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 100 |
| Conread position: | 1-551 |
| Cow position: | chr28:34347223-34346656 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 1-555 |
| Cow position: | chr28:22613947-22614498 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 27 |
| Conread position: | 2-310 |
| Cow position: | chr28:22829953-22830283 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 78, 71 |
| Conread position: | 2-551 |
| Cow position: | chr28:22360663-22361226 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 212 |
| Conread position: | 13-554 |
| Cow position: | chr28:34117128-34117695 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 102-435 |
| Cow position: | chr28:5047345-5047685 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 119-569 |
| Cow position: | chr28:15349604-15350071 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 190 |
| Conread position: | 165-569 |
| Cow position: | chr28:26626975-26626576 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 181-550 |
| Cow position: | chr28:10647874-10647490 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 37, 179 |
| Conread position: | 212-551 |
| Cow position: | chr28:31994394-31994033 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 221-551 |
| Cow position: | chr28:5912577-5912242 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 93 |
| Conread position: | 227-532 |
| Cow position: | chr28:24468326-24468629 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 228-477 |
| Cow position: | chr28:23390615-23390854 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 164 |
| Conread position: | 229-447 |
| Cow position: | chr28:11379521-11379291 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 111 |
| Conread position: | 229-477 |
| Cow position: | chr28:6277243-6276999 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 229-545 |
| Cow position: | chr28:17762623-17762951 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 232-535 |
| Cow position: | chr28:3803136-3803424 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 10, 171 |
| Conread position: | 232-539 |
| Cow position: | chr28:12226266-12225967 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 234-437 |
| Cow position: | chr28:16805185-16804988 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 234-559 |
| Cow position: | chr28:7799909-7799594 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 46 |
| Conread position: | 236-405 |
| Cow position: | chr28:20252224-20252392 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 237-517 |
| Cow position: | chr28:6355357-6355637 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 155 |
| Conread position: | 242-466 |
| Cow position: | chr28:17482649-17482439 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 252-475 |
| Cow position: | chr28:32284701-32284477 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 11, 161 |
| Conread position: | 270-454 |
| Cow position: | chr28:6488088-6488270 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 32 |
| Conread position: | 285-551 |
| Cow position: | chr28:4803137-4802871 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 71, 207 |
| Conread position: | 292-570 |
| Cow position: | chr28:20095211-20095505 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 292-579 |
| Cow position: | chr28:3898380-3898668 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 61, 198 |
| Conread position: | 300-542 |
| Cow position: | chr28:8172900-8172672 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 222, 59 |
| Conread position: | 319-446 |
| Cow position: | chr28:22339760-22339886 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 325-551 |
| Cow position: | chr28:16251887-16251660 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 334-551 |
| Cow position: | chr28:6103091-6103311 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 340-551 |
| Cow position: | chr28:7592584-7592789 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 351-547 |
| Cow position: | chr28:25926718-25926917 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 124, 155 |
| Conread position: | 385-551 |
| Cow position: | chr28:11379277-11379107 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 404-547 |
| Cow position: | chr28:11284082-11283936 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 143 |
| Conread position: | 409-551 |
| Cow position: | chr28:16241245-16241098 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 415-577 |
| Cow position: | chr28:27890324-27890157 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 422-568 |
| Cow position: | chr28:22339897-22340042 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 422-577 |
| Cow position: | chr28:22831051-22831208 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 125 |
Show alignments to all cow chromosomes.