Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-230 |
| Cow position: | chr29:21198628-21198394 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 1-407 |
| Cow position: | chr29:13040511-13040099 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 292 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 125, 44 |
| Conread position: | 1-422 |
| Cow position: | chr29:37207784-37208233 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 312 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 126, 90 |
| Conread position: | 1-543 |
| Cow position: | chr29:16359641-16360205 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 99 |
| Conread position: | 1-547 |
| Cow position: | chr29:2481319-2480761 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 1-551 |
| Cow position: | chr29:8906551-8907117 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 77 |
| Conread position: | 1-551 |
| Cow position: | chr29:18338520-18337956 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 7-499 |
| Cow position: | chr29:22454799-22454292 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 30 |
| Conread position: | 100-378 |
| Cow position: | chr29:30813559-30813861 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 100-457 |
| Cow position: | chr29:478253-478614 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 109-527 |
| Cow position: | chr29:8685139-8685565 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 110 |
| Conread position: | 111-521 |
| Cow position: | chr29:19931459-19931896 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 210 |
| Conread position: | 112-496 |
| Cow position: | chr29:4458723-4459135 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 221-551 |
| Cow position: | chr29:3346231-3346552 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 228-393 |
| Cow position: | chr29:15919831-15919998 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 228-475 |
| Cow position: | chr29:7959552-7959314 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 228-564 |
| Cow position: | chr29:23988762-23989103 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 223 |
| Conread position: | 229-551 |
| Cow position: | chr29:8890986-8890667 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 232-558 |
| Cow position: | chr29:7738418-7738093 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 39 |
| Conread position: | 232-565 |
| Cow position: | chr29:35037008-35037337 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 88 |
| Conread position: | 233-467 |
| Cow position: | chr29:2848146-2847910 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 235-543 |
| Cow position: | chr29:21198364-21198041 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 236-578 |
| Cow position: | chr29:34330963-34330606 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 253-545 |
| Cow position: | chr29:794887-795185 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 264-551 |
| Cow position: | chr29:44028100-44028386 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 288-578 |
| Cow position: | chr29:12193490-12193781 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 292-546 |
| Cow position: | chr29:22655603-22655353 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 194, 68 |
| Conread position: | 292-553 |
| Cow position: | chr29:7892632-7892364 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 101 |
| Conread position: | 304-553 |
| Cow position: | chr29:682188-681946 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 70 |
| Conread position: | 305-468 |
| Cow position: | chr29:5174331-5174498 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 23, 88 |
| Conread position: | 308-552 |
| Cow position: | chr29:28115500-28115751 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 313-542 |
| Cow position: | chr29:4670905-4670675 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 200 |
| Conread position: | 319-551 |
| Cow position: | chr29:34392158-34392400 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 169 |
| Conread position: | 342-551 |
| Cow position: | chr29:1711424-1711633 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 342-587 |
| Cow position: | chr29:849457-849710 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 20, 183 |
| Conread position: | 348-543 |
| Cow position: | chr29:30814071-30814266 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 155 |
| Conread position: | 351-474 |
| Cow position: | chr29:24442930-24442805 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 354-551 |
| Cow position: | chr29:19252663-19252861 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 390-545 |
| Cow position: | chr29:30920949-30920791 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 395-573 |
| Cow position: | chr29:18361256-18361072 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 398-588 |
| Cow position: | chr29:40091683-40091488 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 401-553 |
| Cow position: | chr29:38386855-38387009 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 9 |
Show alignments to all cow chromosomes.