Cow genome map
Conread name: | Ss1.1-Pig2-119N20.5 |
Conread position: | 1-208 |
Cow position: | chr3:1549279-1549485 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 154 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 73, 23 |
Conread position: | 1-220 |
Cow position: | chr3:19689647-19689425 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 159 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 126, 72 |
Conread position: | 1-230 |
Cow position: | chr3:80928943-80928703 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 181 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 96, 48 |
Conread position: | 1-346 |
Cow position: | chr3:45735137-45735487 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 256 |
Alignm E-value: | 8e-37 |
Alignm gaps (pig, cow): | 79, 72 |
Conread position: | 1-416 |
Cow position: | chr3:36538940-36538504 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 317 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 165, 99 |
Conread position: | 1-428 |
Cow position: | chr3:16115579-16115990 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 287 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 70, 40 |
Conread position: | 1-475 |
Cow position: | chr3:84153316-84153795 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 330 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 94, 74 |
Conread position: | 1-542 |
Cow position: | chr3:60854853-60854287 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 75 |
Conread position: | 1-545 |
Cow position: | chr3:27634013-27633443 (view UCSC Genome Browser custom track) |
Alignm length: | 582 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 20 |
Conread position: | 1-546 |
Cow position: | chr3:27347330-27346801 (view UCSC Genome Browser custom track) |
Alignm length: | 566 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 78 |
Conread position: | 1-551 |
Cow position: | chr3:24531823-24532389 (view UCSC Genome Browser custom track) |
Alignm length: | 581 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 32 |
Conread position: | 1-563 |
Cow position: | chr3:77467937-77468538 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 83 |
Conread position: | 2-375 |
Cow position: | chr3:55460497-55460108 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 271 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 91, 36 |
Conread position: | 2-435 |
Cow position: | chr3:77157328-77157759 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 71 |
Conread position: | 3-337 |
Cow position: | chr3:31287114-31286778 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 244 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 61, 44 |
Conread position: | 3-554 |
Cow position: | chr3:23478227-23478801 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 72 |
Conread position: | 5-551 |
Cow position: | chr3:32773213-32773760 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 41 |
Conread position: | 12-545 |
Cow position: | chr3:56042713-56042167 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 75 |
Conread position: | 103-544 |
Cow position: | chr3:21332708-21332259 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 93 |
Conread position: | 103-584 |
Cow position: | chr3:26581973-26581468 (view UCSC Genome Browser custom track) |
Alignm length: | 516 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 98 |
Conread position: | 104-251 |
Cow position: | chr3:69148709-69148558 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 119 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 23, 41 |
Conread position: | 106-471 |
Cow position: | chr3:78545782-78545386 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 281 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 28, 95 |
Conread position: | 112-545 |
Cow position: | chr3:85085963-85086400 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 307 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 15, 88 |
Conread position: | 120-410 |
Cow position: | chr3:8275553-8275867 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 225 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 7, 79 |
Conread position: | 190-488 |
Cow position: | chr3:47497711-47498017 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 110 |
Conread position: | 203-545 |
Cow position: | chr3:41861119-41860801 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 242 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 60, 7 |
Conread position: | 210-556 |
Cow position: | chr3:55107195-55106847 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 117 |
Conread position: | 210-571 |
Cow position: | chr3:50499801-50500145 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 256 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 26, 94 |
Conread position: | 227-542 |
Cow position: | chr3:15091126-15091424 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 22 |
Conread position: | 228-489 |
Cow position: | chr3:65392299-65392570 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 206 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 35, 55 |
Conread position: | 228-535 |
Cow position: | chr3:15329487-15329189 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 222 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 35, 57 |
Conread position: | 228-545 |
Cow position: | chr3:17519562-17519236 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 171 |
Conread position: | 228-551 |
Cow position: | chr3:1549537-1549878 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 243 |
Conread position: | 228-551 |
Cow position: | chr3:12311316-12311645 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 53 |
Conread position: | 229-523 |
Cow position: | chr3:3690455-3690166 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 211 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 48, 86 |
Conread position: | 229-540 |
Cow position: | chr3:43967175-43966865 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 179 |
Conread position: | 229-551 |
Cow position: | chr3:54329109-54328793 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 223 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 34, 155 |
Conread position: | 230-540 |
Cow position: | chr3:79315421-79315731 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 59 |
Conread position: | 230-545 |
Cow position: | chr3:23274724-23274410 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 51 |
Conread position: | 230-569 |
Cow position: | chr3:12531874-12531530 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 40 |
Conread position: | 231-398 |
Cow position: | chr3:16622080-16621909 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 124 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 234-482 |
Cow position: | chr3:56164008-56164260 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 189 |
Conread position: | 234-551 |
Cow position: | chr3:8753708-8754022 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 164 |
Conread position: | 235-396 |
Cow position: | chr3:73827017-73827180 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 120 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 28, 23 |
Conread position: | 235-551 |
Cow position: | chr3:60947947-60947630 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 68 |
Conread position: | 236-405 |
Cow position: | chr3:35144750-35144921 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 127 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 236-537 |
Cow position: | chr3:58954245-58954555 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 204 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 27, 7 |
Conread position: | 237-545 |
Cow position: | chr3:68127344-68127648 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 124 |
Conread position: | 245-541 |
Cow position: | chr3:45641760-45642050 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 224 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 14, 112 |
Conread position: | 252-569 |
Cow position: | chr3:2284951-2285269 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 37 |
Conread position: | 254-545 |
Cow position: | chr3:22054358-22054075 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 35 |
Conread position: | 255-568 |
Cow position: | chr3:78442625-78442302 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 204 |
Conread position: | 262-504 |
Cow position: | chr3:13526907-13527143 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 194 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 93, 22 |
Conread position: | 262-551 |
Cow position: | chr3:39385827-39385543 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 208 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 93, 63 |
Conread position: | 262-551 |
Cow position: | chr3:64081738-64082022 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 210 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 92, 100 |
Conread position: | 269-504 |
Cow position: | chr3:58348760-58348994 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 176 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 85, 31 |
Conread position: | 271-475 |
Cow position: | chr3:73418335-73418542 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 159 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 34, 59 |
Conread position: | 272-544 |
Cow position: | chr3:36515063-36514802 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 199 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 184, 57 |
Conread position: | 275-493 |
Cow position: | chr3:32513825-32513611 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 159 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 77, 14 |
Conread position: | 279-551 |
Cow position: | chr3:31528133-31528390 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 206 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 198, 19 |
Conread position: | 285-551 |
Cow position: | chr3:5084834-5084577 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 201 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 21, 100 |
Conread position: | 290-503 |
Cow position: | chr3:6798695-6798480 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 174 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 69, 101 |
Conread position: | 291-551 |
Cow position: | chr3:73154258-73154515 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 202 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 22, 51 |
Conread position: | 292-545 |
Cow position: | chr3:34165348-34165092 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 196 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 60, 108 |
Conread position: | 292-552 |
Cow position: | chr3:74724139-74723870 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 84 |
Conread position: | 298-582 |
Cow position: | chr3:43004497-43004205 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 81 |
Conread position: | 299-559 |
Cow position: | chr3:81919605-81919353 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 187 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 21, 39 |
Conread position: | 300-582 |
Cow position: | chr3:77589704-77589983 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 60 |
Conread position: | 303-540 |
Cow position: | chr3:63334396-63334155 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 196 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 10, 53 |
Conread position: | 326-535 |
Cow position: | chr3:52657833-52658045 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 161 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 29, 6 |
Conread position: | 327-547 |
Cow position: | chr3:1339241-1339465 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 179 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 74 |
Conread position: | 328-553 |
Cow position: | chr3:31286561-31286335 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 182 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 11 |
Conread position: | 328-553 |
Cow position: | chr3:52817339-52817571 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 169 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 24, 63 |
Conread position: | 332-557 |
Cow position: | chr3:15746211-15745985 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 159 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 69, 28 |
Conread position: | 333-546 |
Cow position: | chr3:82543857-82544067 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 158 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 20, 72 |
Conread position: | 339-488 |
Cow position: | chr3:27879580-27879427 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 128 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 342-551 |
Cow position: | chr3:21282789-21282998 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 153 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 17, 47 |
Conread position: | 351-513 |
Cow position: | chr3:5545320-5545481 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 125 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 51, 35 |
Conread position: | 357-535 |
Cow position: | chr3:69148172-69147991 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 139 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 38, 12 |
Conread position: | 357-579 |
Cow position: | chr3:45735545-45735772 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 159 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 10, 66 |
Conread position: | 379-569 |
Cow position: | chr3:28707337-28707529 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 152 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 24, 73 |
Conread position: | 381-547 |
Cow position: | chr3:18851782-18851940 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 124 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 17, 0 |
Conread position: | 384-554 |
Cow position: | chr3:5317369-5317191 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 140 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 393-555 |
Cow position: | chr3:74436315-74436479 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 120 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 96, 155 |
Conread position: | 395-568 |
Cow position: | chr3:49414339-49414167 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 134 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 95, 15 |
Conread position: | 398-549 |
Cow position: | chr3:83393119-83392965 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 116 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 90, 12 |
Conread position: | 403-559 |
Cow position: | chr3:36538481-36538316 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 123 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.