Cow genome map

Conread name: Ss1.1-Pig2-119N20.5

Conread position: 1-208
Cow position: chr3:1549279-1549485 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 73, 23

Conread position: 1-220
Cow position: chr3:19689647-19689425 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 126, 72

Conread position: 1-230
Cow position: chr3:80928943-80928703 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 96, 48

Conread position: 1-346
Cow position: chr3:45735137-45735487 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 79, 72

Conread position: 1-416
Cow position: chr3:36538940-36538504 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 317
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 165, 99

Conread position: 1-428
Cow position: chr3:16115579-16115990 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 287
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 70, 40

Conread position: 1-475
Cow position: chr3:84153316-84153795 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 330
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 94, 74

Conread position: 1-542
Cow position: chr3:60854853-60854287 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 75

Conread position: 1-545
Cow position: chr3:27634013-27633443 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 20

Conread position: 1-546
Cow position: chr3:27347330-27346801 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 78

Conread position: 1-551
Cow position: chr3:24531823-24532389 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 32

Conread position: 1-563
Cow position: chr3:77467937-77468538 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 83

Conread position: 2-375
Cow position: chr3:55460497-55460108 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 271
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 91, 36

Conread position: 2-435
Cow position: chr3:77157328-77157759 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 71

Conread position: 3-337
Cow position: chr3:31287114-31286778 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 244
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 61, 44

Conread position: 3-554
Cow position: chr3:23478227-23478801 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 72

Conread position: 5-551
Cow position: chr3:32773213-32773760 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 41

Conread position: 12-545
Cow position: chr3:56042713-56042167 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 75

Conread position: 103-544
Cow position: chr3:21332708-21332259 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 93

Conread position: 103-584
Cow position: chr3:26581973-26581468 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 98

Conread position: 104-251
Cow position: chr3:69148709-69148558 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 23, 41

Conread position: 106-471
Cow position: chr3:78545782-78545386 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 281
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 28, 95

Conread position: 112-545
Cow position: chr3:85085963-85086400 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 307
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 15, 88

Conread position: 120-410
Cow position: chr3:8275553-8275867 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 7, 79

Conread position: 190-488
Cow position: chr3:47497711-47498017 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 110

Conread position: 203-545
Cow position: chr3:41861119-41860801 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 60, 7

Conread position: 210-556
Cow position: chr3:55107195-55106847 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 117

Conread position: 210-571
Cow position: chr3:50499801-50500145 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 256
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 26, 94

Conread position: 227-542
Cow position: chr3:15091126-15091424 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 22

Conread position: 228-489
Cow position: chr3:65392299-65392570 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 35, 55

Conread position: 228-535
Cow position: chr3:15329487-15329189 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 35, 57

Conread position: 228-545
Cow position: chr3:17519562-17519236 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 171

Conread position: 228-551
Cow position: chr3:1549537-1549878 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 243

Conread position: 228-551
Cow position: chr3:12311316-12311645 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 53

Conread position: 229-523
Cow position: chr3:3690455-3690166 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 48, 86

Conread position: 229-540
Cow position: chr3:43967175-43966865 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 179

Conread position: 229-551
Cow position: chr3:54329109-54328793 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 34, 155

Conread position: 230-540
Cow position: chr3:79315421-79315731 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 59

Conread position: 230-545
Cow position: chr3:23274724-23274410 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 51

Conread position: 230-569
Cow position: chr3:12531874-12531530 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 40

Conread position: 231-398
Cow position: chr3:16622080-16621909 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 234-482
Cow position: chr3:56164008-56164260 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 189

Conread position: 234-551
Cow position: chr3:8753708-8754022 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 164

Conread position: 235-396
Cow position: chr3:73827017-73827180 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 28, 23

Conread position: 235-551
Cow position: chr3:60947947-60947630 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 68

Conread position: 236-405
Cow position: chr3:35144750-35144921 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 236-537
Cow position: chr3:58954245-58954555 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 204
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 7

Conread position: 237-545
Cow position: chr3:68127344-68127648 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 124

Conread position: 245-541
Cow position: chr3:45641760-45642050 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 112

Conread position: 252-569
Cow position: chr3:2284951-2285269 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 37

Conread position: 254-545
Cow position: chr3:22054358-22054075 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 35

Conread position: 255-568
Cow position: chr3:78442625-78442302 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 204

Conread position: 262-504
Cow position: chr3:13526907-13527143 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 194
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 93, 22

Conread position: 262-551
Cow position: chr3:39385827-39385543 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 208
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 93, 63

Conread position: 262-551
Cow position: chr3:64081738-64082022 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 92, 100

Conread position: 269-504
Cow position: chr3:58348760-58348994 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 85, 31

Conread position: 271-475
Cow position: chr3:73418335-73418542 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 34, 59

Conread position: 272-544
Cow position: chr3:36515063-36514802 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 184, 57

Conread position: 275-493
Cow position: chr3:32513825-32513611 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 77, 14

Conread position: 279-551
Cow position: chr3:31528133-31528390 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 198, 19

Conread position: 285-551
Cow position: chr3:5084834-5084577 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 21, 100

Conread position: 290-503
Cow position: chr3:6798695-6798480 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 174
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 69, 101

Conread position: 291-551
Cow position: chr3:73154258-73154515 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 22, 51

Conread position: 292-545
Cow position: chr3:34165348-34165092 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 60, 108

Conread position: 292-552
Cow position: chr3:74724139-74723870 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 84

Conread position: 298-582
Cow position: chr3:43004497-43004205 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 81

Conread position: 299-559
Cow position: chr3:81919605-81919353 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 21, 39

Conread position: 300-582
Cow position: chr3:77589704-77589983 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 60

Conread position: 303-540
Cow position: chr3:63334396-63334155 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 196
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 10, 53

Conread position: 326-535
Cow position: chr3:52657833-52658045 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 29, 6

Conread position: 327-547
Cow position: chr3:1339241-1339465 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 74

Conread position: 328-553
Cow position: chr3:31286561-31286335 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 11

Conread position: 328-553
Cow position: chr3:52817339-52817571 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 24, 63

Conread position: 332-557
Cow position: chr3:15746211-15745985 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 28

Conread position: 333-546
Cow position: chr3:82543857-82544067 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 72

Conread position: 339-488
Cow position: chr3:27879580-27879427 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 128
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 342-551
Cow position: chr3:21282789-21282998 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 17, 47

Conread position: 351-513
Cow position: chr3:5545320-5545481 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 35

Conread position: 357-535
Cow position: chr3:69148172-69147991 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 38, 12

Conread position: 357-579
Cow position: chr3:45735545-45735772 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 10, 66

Conread position: 379-569
Cow position: chr3:28707337-28707529 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 24, 73

Conread position: 381-547
Cow position: chr3:18851782-18851940 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 384-554
Cow position: chr3:5317369-5317191 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 393-555
Cow position: chr3:74436315-74436479 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 155

Conread position: 395-568
Cow position: chr3:49414339-49414167 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 95, 15

Conread position: 398-549
Cow position: chr3:83393119-83392965 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 90, 12

Conread position: 403-559
Cow position: chr3:36538481-36538316 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Show alignments to all cow chromosomes.