Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-230 |
| Cow position: | chr4:31586811-31586578 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 1-322 |
| Cow position: | chr4:29222509-29222164 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 99 |
| Conread position: | 1-335 |
| Cow position: | chr4:17176163-17176510 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 99 |
| Conread position: | 1-505 |
| Cow position: | chr4:21162684-21163187 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 31 |
| Conread position: | 1-510 |
| Cow position: | chr4:20925968-20925467 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 74 |
| Conread position: | 1-527 |
| Cow position: | chr4:47511036-47511589 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 106 |
| Conread position: | 1-531 |
| Cow position: | chr4:29067630-29067089 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 74 |
| Conread position: | 1-545 |
| Cow position: | chr4:9822162-9822724 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 48 |
| Conread position: | 1-545 |
| Cow position: | chr4:34043612-34043024 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 1-551 |
| Cow position: | chr4:57652254-57652802 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 99 |
| Conread position: | 1-567 |
| Cow position: | chr4:41975702-41975123 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 99 |
| Conread position: | 2-232 |
| Cow position: | chr4:8597677-8597443 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 78, 70 |
| Conread position: | 2-236 |
| Cow position: | chr4:14564900-14564661 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 125, 43 |
| Conread position: | 2-544 |
| Cow position: | chr4:39646684-39647232 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 74 |
| Conread position: | 2-545 |
| Cow position: | chr4:5188997-5188431 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 71 |
| Conread position: | 5-551 |
| Cow position: | chr4:6630272-6629747 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 8 |
| Conread position: | 9-407 |
| Cow position: | chr4:59565556-59565987 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 22-578 |
| Cow position: | chr4:53641356-53641919 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 53 |
| Conread position: | 50-542 |
| Cow position: | chr4:2443816-2443322 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 209 |
| Conread position: | 142-551 |
| Cow position: | chr4:57566060-57565639 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 172-424 |
| Cow position: | chr4:45113067-45112822 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 183-554 |
| Cow position: | chr4:13920216-13919842 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 26, 219 |
| Conread position: | 184-550 |
| Cow position: | chr4:15046075-15046465 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 278 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 11, 160 |
| Conread position: | 188-482 |
| Cow position: | chr4:47087200-47086903 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 210-541 |
| Cow position: | chr4:68107122-68106793 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 192, 149 |
| Conread position: | 218-457 |
| Cow position: | chr4:14564648-14564436 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 218-507 |
| Cow position: | chr4:46875259-46874968 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 15, 150 |
| Conread position: | 221-567 |
| Cow position: | chr4:5783979-5784313 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 120 |
| Conread position: | 228-543 |
| Cow position: | chr4:49741825-49742134 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 41 |
| Conread position: | 228-554 |
| Cow position: | chr4:58432706-58432379 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 229-531 |
| Cow position: | chr4:7655022-7655337 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 229-546 |
| Cow position: | chr4:36759528-36759864 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 229-555 |
| Cow position: | chr4:22507124-22506795 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 178 |
| Conread position: | 230-578 |
| Cow position: | chr4:58873513-58873849 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 233-448 |
| Cow position: | chr4:27228724-27228951 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 30, 51 |
| Conread position: | 233-542 |
| Cow position: | chr4:27505387-27505688 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 236-545 |
| Cow position: | chr4:34572266-34571952 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 236-575 |
| Cow position: | chr4:58856246-58855912 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 218 |
| Conread position: | 237-456 |
| Cow position: | chr4:24713393-24713166 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 239-544 |
| Cow position: | chr4:57221951-57221640 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 240-520 |
| Cow position: | chr4:15283453-15283732 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 251-396 |
| Cow position: | chr4:15120219-15120368 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 251-553 |
| Cow position: | chr4:63928537-63928233 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 255-551 |
| Cow position: | chr4:31003075-31002772 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 256-509 |
| Cow position: | chr4:36662069-36661831 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 73 |
| Conread position: | 259-575 |
| Cow position: | chr4:25924672-25924354 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 128 |
| Conread position: | 263-568 |
| Cow position: | chr4:32140977-32140676 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 145, 53 |
| Conread position: | 270-551 |
| Cow position: | chr4:49881711-49881410 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 47, 226 |
| Conread position: | 275-451 |
| Cow position: | chr4:32749764-32749956 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 5, 111 |
| Conread position: | 276-470 |
| Cow position: | chr4:51905574-51905773 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 285-488 |
| Cow position: | chr4:62407473-62407672 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 98 |
| Conread position: | 285-554 |
| Cow position: | chr4:5978521-5978253 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 291-551 |
| Cow position: | chr4:45400976-45401231 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 295-579 |
| Cow position: | chr4:5886662-5886944 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 102 |
| Conread position: | 297-501 |
| Cow position: | chr4:54347527-54347738 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 298-584 |
| Cow position: | chr4:31586273-31585990 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 57 |
| Conread position: | 301-503 |
| Cow position: | chr4:1059352-1059148 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 158 |
| Conread position: | 302-507 |
| Cow position: | chr4:9089751-9089539 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 98 |
| Conread position: | 305-545 |
| Cow position: | chr4:4519485-4519726 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 96, 50 |
| Conread position: | 306-512 |
| Cow position: | chr4:4192534-4192741 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 36 |
| Conread position: | 308-546 |
| Cow position: | chr4:52597215-52596970 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 318-476 |
| Cow position: | chr4:63875737-63875583 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 36, 78 |
| Conread position: | 334-569 |
| Cow position: | chr4:59809589-59809357 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 21, 120 |
| Conread position: | 342-566 |
| Cow position: | chr4:58830494-58830279 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 351-529 |
| Cow position: | chr4:4029209-4029392 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 356-544 |
| Cow position: | chr4:67321483-67321666 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 61 |
| Conread position: | 395-559 |
| Cow position: | chr4:22891677-22891508 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 412-541 |
| Cow position: | chr4:6793927-6794058 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 427-549 |
| Cow position: | chr4:17177982-17178108 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.