Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-208 |
| Cow position: | chr6:27710710-27710919 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 126, 71 |
| Conread position: | 1-314 |
| Cow position: | chr6:4666734-4666397 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 42, 61 |
| Conread position: | 1-407 |
| Cow position: | chr6:69274727-69274289 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 81, 74 |
| Conread position: | 1-514 |
| Cow position: | chr6:44377332-44377866 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 71 |
| Conread position: | 1-516 |
| Cow position: | chr6:39917231-39917762 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 48 |
| Conread position: | 1-544 |
| Cow position: | chr6:45692597-45692044 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 104 |
| Conread position: | 1-551 |
| Cow position: | chr6:29077797-29078359 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 81 |
| Conread position: | 1-551 |
| Cow position: | chr6:45617371-45616805 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 1-554 |
| Cow position: | chr6:23891619-23892187 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 1-554 |
| Cow position: | chr6:41557531-41558117 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 48 |
| Conread position: | 1-570 |
| Cow position: | chr6:31688124-31687541 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 2-545 |
| Cow position: | chr6:11159940-11159369 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 70 |
| Conread position: | 3-366 |
| Cow position: | chr6:6244842-6244474 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 82, 19 |
| Conread position: | 4-230 |
| Cow position: | chr6:12519563-12519788 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 127, 77 |
| Conread position: | 20-581 |
| Cow position: | chr6:6635225-6635805 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 21 |
| Conread position: | 28-530 |
| Cow position: | chr6:23932874-23932388 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 103-507 |
| Cow position: | chr6:41157392-41157808 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 105-532 |
| Cow position: | chr6:62754328-62753883 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 106-455 |
| Cow position: | chr6:29082895-29082553 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 107-545 |
| Cow position: | chr6:58593949-58593520 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 155-551 |
| Cow position: | chr6:1940251-1939857 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 173-474 |
| Cow position: | chr6:3374181-3373865 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 224 |
| Conread position: | 179-562 |
| Cow position: | chr6:53416722-53416313 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 183-549 |
| Cow position: | chr6:66676967-66677362 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 33, 317 |
| Conread position: | 217-535 |
| Cow position: | chr6:68318726-68318414 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 221-567 |
| Cow position: | chr6:28087216-28086862 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 225-543 |
| Cow position: | chr6:44389948-44389625 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 228 |
| Conread position: | 228-493 |
| Cow position: | chr6:65227974-65227701 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 35, 97 |
| Conread position: | 229-504 |
| Cow position: | chr6:32428749-32429016 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 7, 57 |
| Conread position: | 229-509 |
| Cow position: | chr6:55662035-55662324 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 34, 97 |
| Conread position: | 230-471 |
| Cow position: | chr6:812102-811852 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 230-551 |
| Cow position: | chr6:20332615-20332939 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 88 |
| Conread position: | 232-545 |
| Cow position: | chr6:35698111-35697792 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 28 |
| Conread position: | 232-551 |
| Cow position: | chr6:1077115-1076789 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 233-535 |
| Cow position: | chr6:6722456-6722761 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 123, 49 |
| Conread position: | 236-541 |
| Cow position: | chr6:46627316-46627611 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 236-545 |
| Cow position: | chr6:3017774-3018093 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 111 |
| Conread position: | 236-579 |
| Cow position: | chr6:5275676-5275320 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 238-545 |
| Cow position: | chr6:54930404-54930094 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 241-513 |
| Cow position: | chr6:35831862-35832146 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 87, 175 |
| Conread position: | 243-396 |
| Cow position: | chr6:12516152-12516309 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 245-463 |
| Cow position: | chr6:22098343-22098129 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 251-510 |
| Cow position: | chr6:54470188-54470454 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 174 |
| Conread position: | 253-579 |
| Cow position: | chr6:14279984-14280319 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 58 |
| Conread position: | 262-510 |
| Cow position: | chr6:2088605-2088847 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 13 |
| Conread position: | 268-496 |
| Cow position: | chr6:33311452-33311679 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 88, 110 |
| Conread position: | 285-507 |
| Cow position: | chr6:39293535-39293755 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 123, 85 |
| Conread position: | 285-545 |
| Cow position: | chr6:54295988-54296236 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 198, 70 |
| Conread position: | 291-569 |
| Cow position: | chr6:35126741-35126462 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 292-538 |
| Cow position: | chr6:34556878-34557128 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 108, 173 |
| Conread position: | 293-501 |
| Cow position: | chr6:5500697-5500481 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 62, 75 |
| Conread position: | 296-527 |
| Cow position: | chr6:37085267-37085500 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 297-577 |
| Cow position: | chr6:14162235-14161959 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 192, 19 |
| Conread position: | 298-541 |
| Cow position: | chr6:40241060-40241302 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 54, 152 |
| Conread position: | 299-520 |
| Cow position: | chr6:43596172-43595944 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 300-462 |
| Cow position: | chr6:15894885-15894730 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 91 |
| Conread position: | 303-557 |
| Cow position: | chr6:4666120-4665870 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 312-546 |
| Cow position: | chr6:24496542-24496302 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 313-535 |
| Cow position: | chr6:55398193-55398412 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 175, 47 |
| Conread position: | 319-566 |
| Cow position: | chr6:27711024-27711278 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 190 |
| Conread position: | 321-543 |
| Cow position: | chr6:50501993-50502214 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 76 |
| Conread position: | 337-569 |
| Cow position: | chr6:3741895-3742117 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 341-551 |
| Cow position: | chr6:15261005-15261219 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 341-551 |
| Cow position: | chr6:15262050-15262264 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 342-564 |
| Cow position: | chr6:20748803-20749029 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 352-546 |
| Cow position: | chr6:44771264-44771448 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 131, 45 |
| Conread position: | 362-580 |
| Cow position: | chr6:69274115-69273882 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 133 |
| Conread position: | 373-551 |
| Cow position: | chr6:3936169-3935994 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 116, 20 |
| Conread position: | 379-551 |
| Cow position: | chr6:24260354-24260177 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 142 |
| Conread position: | 403-544 |
| Cow position: | chr6:6244261-6244120 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 405-543 |
| Cow position: | chr6:16495129-16494988 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 408-558 |
| Cow position: | chr6:13092589-13092436 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 409-551 |
| Cow position: | chr6:30287032-30287177 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 412-541 |
| Cow position: | chr6:28008965-28008833 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 418-545 |
| Cow position: | chr6:24337576-24337446 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.