Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-167 |
| Cow position: | chr7:35754525-35754689 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 1-192 |
| Cow position: | chr7:11187282-11187477 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 1-195 |
| Cow position: | chr7:63547957-63547761 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 96, 73 |
| Conread position: | 1-226 |
| Cow position: | chr7:61425614-61425848 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 73, 104 |
| Conread position: | 1-448 |
| Cow position: | chr7:65953337-65952868 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 317 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 126, 63 |
| Conread position: | 1-485 |
| Cow position: | chr7:13822847-13823351 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 1-540 |
| Cow position: | chr7:62516073-62516629 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 1-542 |
| Cow position: | chr7:29378082-29377530 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 57 |
| Conread position: | 1-551 |
| Cow position: | chr7:43004440-43005018 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 1-560 |
| Cow position: | chr7:11593141-11592589 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 12 |
| Conread position: | 1-572 |
| Cow position: | chr7:20104957-20104354 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 82 |
| Conread position: | 1-579 |
| Cow position: | chr7:20289212-20288601 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 109 |
| Conread position: | 2-229 |
| Cow position: | chr7:1398219-1397999 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 98 |
| Conread position: | 2-521 |
| Cow position: | chr7:42222372-42221819 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 73 |
| Conread position: | 2-569 |
| Cow position: | chr7:48335407-48334855 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 3-163 |
| Cow position: | chr7:61754657-61754812 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 70 |
| Conread position: | 16-506 |
| Cow position: | chr7:39512519-39512025 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 59 |
| Conread position: | 103-304 |
| Cow position: | chr7:27763139-27763354 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 195 |
| Conread position: | 103-331 |
| Cow position: | chr7:64366720-64366964 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 107-550 |
| Cow position: | chr7:67498863-67499325 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 108-553 |
| Cow position: | chr7:56664234-56664688 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 120 |
| Conread position: | 109-513 |
| Cow position: | chr7:5701086-5701520 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 174-552 |
| Cow position: | chr7:68246565-68246939 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 184-564 |
| Cow position: | chr7:61200888-61201281 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 210-535 |
| Cow position: | chr7:45064130-45063801 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 210-542 |
| Cow position: | chr7:59844745-59845077 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 210-544 |
| Cow position: | chr7:52131410-52131754 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 60, 233 |
| Conread position: | 219-554 |
| Cow position: | chr7:62048709-62049046 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 229-389 |
| Cow position: | chr7:59164205-59164368 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 229-478 |
| Cow position: | chr7:43231056-43231302 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 174 |
| Conread position: | 229-551 |
| Cow position: | chr7:49967917-49967613 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 229-571 |
| Cow position: | chr7:5435577-5435250 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 163 |
| Conread position: | 229-571 |
| Cow position: | chr7:5447995-5447666 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 153 |
| Conread position: | 231-393 |
| Cow position: | chr7:1666783-1666949 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 64 |
| Conread position: | 233-398 |
| Cow position: | chr7:23921492-23921659 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 235-531 |
| Cow position: | chr7:45099541-45099845 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 237-545 |
| Cow position: | chr7:45722046-45722344 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 28, 43 |
| Conread position: | 239-432 |
| Cow position: | chr7:31442036-31441835 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 239-559 |
| Cow position: | chr7:46216365-46216689 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 262-541 |
| Cow position: | chr7:52532772-52532498 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 262-553 |
| Cow position: | chr7:6006837-6006552 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 267-576 |
| Cow position: | chr7:61425917-61426235 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 187 |
| Conread position: | 269-488 |
| Cow position: | chr7:63328447-63328660 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 285-545 |
| Cow position: | chr7:59204633-59204911 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 292-545 |
| Cow position: | chr7:24883642-24883387 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 108 |
| Conread position: | 292-545 |
| Cow position: | chr7:40622552-40622803 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 62, 96 |
| Conread position: | 292-551 |
| Cow position: | chr7:40023078-40023316 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 293-545 |
| Cow position: | chr7:68366880-68366614 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 43, 141 |
| Conread position: | 309-507 |
| Cow position: | chr7:30027524-30027731 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 46, 119 |
| Conread position: | 333-561 |
| Cow position: | chr7:54060433-54060189 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 19, 228 |
| Conread position: | 336-524 |
| Cow position: | chr7:40615927-40616097 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 336-583 |
| Cow position: | chr7:32589219-32589478 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 339-556 |
| Cow position: | chr7:43257614-43257831 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 354-514 |
| Cow position: | chr7:64367125-64367293 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 372-551 |
| Cow position: | chr7:27765709-27765883 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 114, 127 |
| Conread position: | 387-562 |
| Cow position: | chr7:8893582-8893402 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 395-559 |
| Cow position: | chr7:48413595-48413429 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 399-567 |
| Cow position: | chr7:59164790-59164954 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 7, 61 |
| Conread position: | 404-542 |
| Cow position: | chr7:65519630-65519489 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 418-545 |
| Cow position: | chr7:58872323-58872191 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 419-559 |
| Cow position: | chr7:31441620-31441480 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 15 |
Show alignments to all cow chromosomes.