Cow genome map

Conread name: Ss1.1-Pig2-119N20.5

Conread position: 1-230
Cow position: chr8:11792227-11792477 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 1-230
Cow position: chr8:21119242-21119008 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 94, 45

Conread position: 1-231
Cow position: chr8:8480909-8480678 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 79, 44

Conread position: 1-241
Cow position: chr8:22103166-22102937 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 126, 72

Conread position: 1-248
Cow position: chr8:27369118-27369368 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 79, 72

Conread position: 1-346
Cow position: chr8:21078571-21078927 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 263
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 126, 67

Conread position: 1-507
Cow position: chr8:19369456-19368957 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 82

Conread position: 1-527
Cow position: chr8:48682464-48681912 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 74

Conread position: 1-541
Cow position: chr8:33437823-33438388 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 64

Conread position: 1-543
Cow position: chr8:19772528-19773064 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 64

Conread position: 1-545
Cow position: chr8:2974682-2975264 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 19

Conread position: 1-551
Cow position: chr8:40432835-40432266 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 74

Conread position: 1-551
Cow position: chr8:45686401-45685873 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 73

Conread position: 1-553
Cow position: chr8:32720006-32720513 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 14

Conread position: 1-560
Cow position: chr8:54158763-54159351 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 74

Conread position: 3-551
Cow position: chr8:7104383-7103813 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 8

Conread position: 3-586
Cow position: chr8:30021884-30021291 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 69

Conread position: 101-506
Cow position: chr8:51877808-51877394 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 46

Conread position: 103-510
Cow position: chr8:5874283-5874703 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 152

Conread position: 106-412
Cow position: chr8:952165-952487 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 217
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 96

Conread position: 106-527
Cow position: chr8:4336937-4336483 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 374

Conread position: 106-564
Cow position: chr8:18725344-18725822 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 253

Conread position: 108-550
Cow position: chr8:40273507-40273044 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 203

Conread position: 112-547
Cow position: chr8:20341571-20341091 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 347
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 15, 31

Conread position: 119-438
Cow position: chr8:7126225-7125889 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 237
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 13, 152

Conread position: 159-373
Cow position: chr8:51443366-51443139 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 9, 51

Conread position: 160-545
Cow position: chr8:32327093-32327490 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 263
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 35, 131

Conread position: 165-494
Cow position: chr8:42151796-42151462 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 69, 45

Conread position: 178-513
Cow position: chr8:23440878-23440547 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 26

Conread position: 184-461
Cow position: chr8:18810658-18810941 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 79, 29

Conread position: 184-567
Cow position: chr8:14617669-14617278 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 188-529
Cow position: chr8:53359729-53359376 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 251
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 37, 9

Conread position: 228-333
Cow position: chr8:31185283-31185389 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 229-487
Cow position: chr8:54828516-54828773 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 32, 56

Conread position: 229-506
Cow position: chr8:53891806-53892088 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 95

Conread position: 229-551
Cow position: chr8:47128844-47129171 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 25

Conread position: 231-551
Cow position: chr8:8480379-8480046 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 36

Conread position: 231-554
Cow position: chr8:37381419-37381730 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 17

Conread position: 232-393
Cow position: chr8:38987136-38987300 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 6, 12

Conread position: 232-542
Cow position: chr8:18883101-18883420 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 148

Conread position: 233-539
Cow position: chr8:15870825-15870517 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 210
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 30, 155

Conread position: 233-551
Cow position: chr8:6508002-6507672 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 25

Conread position: 233-551
Cow position: chr8:6764002-6763682 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 86

Conread position: 235-401
Cow position: chr8:20672157-20671997 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 46

Conread position: 236-408
Cow position: chr8:21945710-21945885 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 7

Conread position: 236-411
Cow position: chr8:51633922-51633741 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 27, 160

Conread position: 236-550
Cow position: chr8:18801518-18801833 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 156

Conread position: 236-571
Cow position: chr8:33818952-33818617 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 27, 213

Conread position: 238-544
Cow position: chr8:22102910-22102594 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 242-398
Cow position: chr8:41411521-41411678 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 112, 23

Conread position: 242-551
Cow position: chr8:28387487-28387187 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 43

Conread position: 243-546
Cow position: chr8:36608761-36608466 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 97

Conread position: 264-507
Cow position: chr8:37193275-37193528 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 45, 100

Conread position: 270-541
Cow position: chr8:9672193-9672472 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 85, 195

Conread position: 285-543
Cow position: chr8:19793385-19793127 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 67, 134

Conread position: 292-553
Cow position: chr8:31887980-31888233 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 65, 113

Conread position: 295-545
Cow position: chr8:1168107-1167859 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 60, 23

Conread position: 296-474
Cow position: chr8:6959680-6959513 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 20

Conread position: 296-550
Cow position: chr8:51573343-51573081 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 77

Conread position: 297-552
Cow position: chr8:19305400-19305644 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 191, 30

Conread position: 300-551
Cow position: chr8:10167183-10167427 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 60

Conread position: 313-584
Cow position: chr8:49406360-49406103 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 42, 76

Conread position: 318-551
Cow position: chr8:26041021-26040795 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 12, 94

Conread position: 322-545
Cow position: chr8:11794557-11794773 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 33, 69

Conread position: 325-545
Cow position: chr8:28049159-28048953 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 37, 55

Conread position: 342-563
Cow position: chr8:31185622-31185848 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 134

Conread position: 343-564
Cow position: chr8:9986174-9986408 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 351-551
Cow position: chr8:32960199-32960001 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 139, 22

Conread position: 352-542
Cow position: chr8:15822035-15822221 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 134, 21

Conread position: 356-513
Cow position: chr8:7102487-7102649 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 130
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 44, 106

Conread position: 389-571
Cow position: chr8:54423330-54423149 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 100, 16

Conread position: 405-545
Cow position: chr8:14703105-14702967 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 89, 12

Conread position: 405-545
Cow position: chr8:21900125-21900264 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 79

Show alignments to all cow chromosomes.