Cow genome map

Conread name: Ss1.1-Pig2-119N20.5

Conread position: 1-208
Cow position:
Alignm length: 218
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 72

Conread position: 1-338
Cow position:
Alignm length: 358
Alignm identity: 253
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 94, 43

Conread position: 1-435
Cow position:
Alignm length: 452
Alignm identity: 302
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 79, 74

Conread position: 1-535
Cow position:
Alignm length: 578
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 28

Conread position: 1-551
Cow position:
Alignm length: 574
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 12

Conread position: 1-551
Cow position:
Alignm length: 599
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 59

Conread position: 1-559
Cow position:
Alignm length: 588
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 75

Conread position: 1-560
Cow position:
Alignm length: 593
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 75

Conread position: 1-567
Cow position:
Alignm length: 577
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 74

Conread position: 2-236
Cow position:
Alignm length: 239
Alignm identity: 169
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 72, 38

Conread position: 2-262
Cow position:
Alignm length: 269
Alignm identity: 192
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 81, 73

Conread position: 2-392
Cow position:
Alignm length: 424
Alignm identity: 288
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 79, 73

Conread position: 2-553
Cow position:
Alignm length: 584
Alignm identity: 383
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 47, 83

Conread position: 3-569
Cow position:
Alignm length: 620
Alignm identity: 413
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 71, 56

Conread position: 10-513
Cow position:
Alignm length: 534
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 66

Conread position: 78-551
Cow position:
Alignm length: 512
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 102-567
Cow position:
Alignm length: 483
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 51

Conread position: 103-428
Cow position:
Alignm length: 357
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 326

Conread position: 103-514
Cow position:
Alignm length: 425
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 114

Conread position: 106-471
Cow position:
Alignm length: 404
Alignm identity: 289
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 16

Conread position: 125-559
Cow position:
Alignm length: 454
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 65

Conread position: 133-407
Cow position:
Alignm length: 284
Alignm identity: 191
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 72, 64

Conread position: 210-545
Cow position:
Alignm length: 342
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 148

Conread position: 228-413
Cow position:
Alignm length: 188
Alignm identity: 129
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 35, 62

Conread position: 228-527
Cow position:
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 49

Conread position: 229-404
Cow position:
Alignm length: 181
Alignm identity: 134
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 229-475
Cow position:
Alignm length: 253
Alignm identity: 174
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 8, 97

Conread position: 229-559
Cow position:
Alignm length: 332
Alignm identity: 233
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 34, 83

Conread position: 230-540
Cow position:
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 55

Conread position: 230-566
Cow position:
Alignm length: 348
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 51

Conread position: 231-487
Cow position:
Alignm length: 265
Alignm identity: 198
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 32, 27

Conread position: 233-444
Cow position:
Alignm length: 215
Alignm identity: 157
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 30, 56

Conread position: 233-545
Cow position:
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 165

Conread position: 233-559
Cow position:
Alignm length: 338
Alignm identity: 225
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 30, 155

Conread position: 234-407
Cow position:
Alignm length: 178
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 29, 18

Conread position: 234-524
Cow position:
Alignm length: 295
Alignm identity: 212
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 31, 137

Conread position: 234-551
Cow position:
Alignm length: 327
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 61

Conread position: 234-557
Cow position:
Alignm length: 325
Alignm identity: 219
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 100

Conread position: 235-393
Cow position:
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 45

Conread position: 235-541
Cow position:
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 41

Conread position: 235-543
Cow position:
Alignm length: 314
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 7, 81

Conread position: 237-551
Cow position:
Alignm length: 324
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 51

Conread position: 245-546
Cow position:
Alignm length: 307
Alignm identity: 218
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 18, 40

Conread position: 249-392
Cow position:
Alignm length: 147
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 90

Conread position: 251-551
Cow position:
Alignm length: 305
Alignm identity: 223
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 12, 30

Conread position: 254-551
Cow position:
Alignm length: 306
Alignm identity: 212
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 9, 60

Conread position: 262-568
Cow position:
Alignm length: 318
Alignm identity: 224
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 32, 38

Conread position: 263-488
Cow position:
Alignm length: 231
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 214

Conread position: 284-543
Cow position:
Alignm length: 271
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 286-529
Cow position:
Alignm length: 254
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 194

Conread position: 292-463
Cow position:
Alignm length: 178
Alignm identity: 131
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 104, 48

Conread position: 296-557
Cow position:
Alignm length: 265
Alignm identity: 189
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 192, 45

Conread position: 298-545
Cow position:
Alignm length: 251
Alignm identity: 183
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 179, 42

Conread position: 299-551
Cow position:
Alignm length: 258
Alignm identity: 191
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 102, 40

Conread position: 299-558
Cow position:
Alignm length: 277
Alignm identity: 192
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 152

Conread position: 305-551
Cow position:
Alignm length: 250
Alignm identity: 188
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 185, 30

Conread position: 319-551
Cow position:
Alignm length: 241
Alignm identity: 173
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 36, 172

Conread position: 330-541
Cow position:
Alignm length: 216
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 67

Conread position: 332-579
Cow position:
Alignm length: 260
Alignm identity: 183
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 24, 63

Conread position: 333-545
Cow position:
Alignm length: 219
Alignm identity: 161
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 69, 22

Conread position: 336-522
Cow position:
Alignm length: 195
Alignm identity: 142
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 19, 99

Conread position: 339-475
Cow position:
Alignm length: 138
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 13, 65

Conread position: 342-551
Cow position:
Alignm length: 216
Alignm identity: 159
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 0

Conread position: 342-553
Cow position:
Alignm length: 220
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 27

Conread position: 346-533
Cow position:
Alignm length: 200
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 350-545
Cow position:
Alignm length: 199
Alignm identity: 149
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 138, 7

Conread position: 351-561
Cow position:
Alignm length: 214
Alignm identity: 154
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 133, 14

Conread position: 361-513
Cow position:
Alignm length: 160
Alignm identity: 125
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 49, 94

Conread position: 375-535
Cow position:
Alignm length: 165
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 133

Conread position: 375-567
Cow position:
Alignm length: 196
Alignm identity: 147
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 109, 22

Conread position: 398-551
Cow position:
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 91, 75

Conread position: 404-554
Cow position:
Alignm length: 154
Alignm identity: 115
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 86, 16

Conread position: 407-551
Cow position:
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 14

Conread position: 421-551
Cow position:
Alignm length: 134
Alignm identity: 108
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 0

Show alignments to all cow chromosomes.