Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-208 |
| Cow position: | chr9:12183754-12183541 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 1-338 |
| Cow position: | chr9:44944098-44944451 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 94, 43 |
| Conread position: | 1-435 |
| Cow position: | chr9:51269876-51269433 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 302 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 79, 74 |
| Conread position: | 1-535 |
| Cow position: | chr9:12198889-12199460 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 28 |
| Conread position: | 1-551 |
| Cow position: | chr9:6109895-6109343 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 1-551 |
| Cow position: | chr9:41317966-41318553 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 59 |
| Conread position: | 1-559 |
| Cow position: | chr9:18570378-18570961 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 75 |
| Conread position: | 1-560 |
| Cow position: | chr9:34762844-34763433 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 75 |
| Conread position: | 1-567 |
| Cow position: | chr9:25502524-25503084 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 2-236 |
| Cow position: | chr9:10761340-10761572 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 2-262 |
| Cow position: | chr9:4834995-4834734 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 2-392 |
| Cow position: | chr9:1281093-1281514 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 79, 73 |
| Conread position: | 2-553 |
| Cow position: | chr9:14732343-14731772 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 383 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 47, 83 |
| Conread position: | 3-569 |
| Cow position: | chr9:5622018-5622630 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 413 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 71, 56 |
| Conread position: | 10-513 |
| Cow position: | chr9:9077105-9077624 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 78-551 |
| Cow position: | chr9:2638382-2638884 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 102-567 |
| Cow position: | chr9:34188874-34188402 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 103-428 |
| Cow position: | chr9:52725441-52725796 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 326 |
| Conread position: | 103-514 |
| Cow position: | chr9:4985476-4985897 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 106-471 |
| Cow position: | chr9:53596901-53597299 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 125-559 |
| Cow position: | chr9:38698357-38697916 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 133-407 |
| Cow position: | chr9:46657783-46658063 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 210-545 |
| Cow position: | chr9:15855259-15855597 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 148 |
| Conread position: | 228-413 |
| Cow position: | chr9:3582855-3583041 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 228-527 |
| Cow position: | chr9:6557581-6557280 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 229-404 |
| Cow position: | chr9:40858922-40859102 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 229-475 |
| Cow position: | chr9:35527469-35527223 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 8, 97 |
| Conread position: | 229-559 |
| Cow position: | chr9:34674805-34674501 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 83 |
| Conread position: | 230-540 |
| Cow position: | chr9:12565139-12564836 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 55 |
| Conread position: | 230-566 |
| Cow position: | chr9:4834741-4834404 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 51 |
| Conread position: | 231-487 |
| Cow position: | chr9:50108839-50108584 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 233-444 |
| Cow position: | chr9:26197881-26198088 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 233-545 |
| Cow position: | chr9:39001521-39001220 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 233-559 |
| Cow position: | chr9:31540153-31540484 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 155 |
| Conread position: | 234-407 |
| Cow position: | chr9:9539348-9539176 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 234-524 |
| Cow position: | chr9:7670371-7670084 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 31, 137 |
| Conread position: | 234-551 |
| Cow position: | chr9:1527043-1527367 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 234-557 |
| Cow position: | chr9:52766699-52767001 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 235-393 |
| Cow position: | chr9:20180863-20180709 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 235-541 |
| Cow position: | chr9:22377005-22376704 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 41 |
| Conread position: | 235-543 |
| Cow position: | chr9:8234354-8234053 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 237-551 |
| Cow position: | chr9:12183473-12183161 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 51 |
| Conread position: | 245-546 |
| Cow position: | chr9:47200478-47200772 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 249-392 |
| Cow position: | chr9:7537814-7537958 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 14, 90 |
| Conread position: | 251-551 |
| Cow position: | chr9:25812572-25812860 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 254-551 |
| Cow position: | chr9:56411392-56411685 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 262-568 |
| Cow position: | chr9:13072090-13071779 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 263-488 |
| Cow position: | chr9:58125907-58125678 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 214 |
| Conread position: | 284-543 |
| Cow position: | chr9:19835681-19835946 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 286-529 |
| Cow position: | chr9:45140597-45140346 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 194 |
| Conread position: | 292-463 |
| Cow position: | chr9:18566724-18566894 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 296-557 |
| Cow position: | chr9:62721153-62721412 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 192, 45 |
| Conread position: | 298-545 |
| Cow position: | chr9:35795101-35794871 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 179, 42 |
| Conread position: | 299-551 |
| Cow position: | chr9:26585398-26585152 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 102, 40 |
| Conread position: | 299-558 |
| Cow position: | chr9:4915375-4915650 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 152 |
| Conread position: | 305-551 |
| Cow position: | chr9:23294318-23294077 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 185, 30 |
| Conread position: | 319-551 |
| Cow position: | chr9:15282844-15282609 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 172 |
| Conread position: | 330-541 |
| Cow position: | chr9:19119561-19119768 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 332-579 |
| Cow position: | chr9:1517635-1517886 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 333-545 |
| Cow position: | chr9:40923000-40923214 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 69, 22 |
| Conread position: | 336-522 |
| Cow position: | chr9:19081946-19082134 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 99 |
| Conread position: | 339-475 |
| Cow position: | chr9:25634652-25634516 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 13, 65 |
| Conread position: | 342-551 |
| Cow position: | chr9:39994114-39994329 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 342-553 |
| Cow position: | chr9:64606090-64606304 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 346-533 |
| Cow position: | chr9:59114093-59113894 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 350-545 |
| Cow position: | chr9:33326240-33326054 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 138, 7 |
| Conread position: | 351-561 |
| Cow position: | chr9:55203025-55203233 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 133, 14 |
| Conread position: | 361-513 |
| Cow position: | chr9:42366452-42366297 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 375-535 |
| Cow position: | chr9:26033670-26033829 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 29, 133 |
| Conread position: | 375-567 |
| Cow position: | chr9:56795112-56795299 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 109, 22 |
| Conread position: | 398-551 |
| Cow position: | chr9:416870-416715 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 75 |
| Conread position: | 404-554 |
| Cow position: | chr9:37301926-37301774 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 86, 16 |
| Conread position: | 407-551 |
| Cow position: | chr9:20394655-20394800 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 421-551 |
| Cow position: | chr9:35527055-35526922 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.