Cow genome map
| Conread name: | Ss1.1-Pig2-119N20.5 |
| Conread position: | 1-551 |
| Cow position: | chrX:18814222-18814798 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 74 |
| Conread position: | 1-551 |
| Cow position: | chrX:21816316-21816888 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 1-551 |
| Cow position: | chrX:25453234-25453794 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 19 |
| Conread position: | 1-565 |
| Cow position: | chrX:12689036-12688439 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 75 |
| Conread position: | 1-569 |
| Cow position: | chrX:11675115-11675716 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 99 |
| Conread position: | 1-578 |
| Cow position: | chrX:23254155-23253570 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 246 |
| Conread position: | 2-527 |
| Cow position: | chrX:21886064-21885501 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 2-545 |
| Cow position: | chrX:2186311-2186872 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 41 |
| Conread position: | 2-545 |
| Cow position: | chrX:24201232-24201773 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 2-551 |
| Cow position: | chrX:20504767-20505327 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 73 |
| Conread position: | 2-569 |
| Cow position: | chrX:16816724-16817282 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 59 |
| Conread position: | 3-421 |
| Cow position: | chrX:8558410-8557978 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 3-535 |
| Cow position: | chrX:2147396-2147915 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 45 |
| Conread position: | 7-230 |
| Cow position: | chrX:19018203-19017969 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 88, 93 |
| Conread position: | 25-527 |
| Cow position: | chrX:956555-957086 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 50 |
| Conread position: | 100-569 |
| Cow position: | chrX:4590100-4590587 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 246 |
| Conread position: | 101-551 |
| Cow position: | chrX:9910607-9910136 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 106 |
| Conread position: | 103-445 |
| Cow position: | chrX:31816841-31817188 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 108-444 |
| Cow position: | chrX:25106366-25106738 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 294 |
| Conread position: | 108-551 |
| Cow position: | chrX:19127466-19127021 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 66 |
| Conread position: | 114-566 |
| Cow position: | chrX:40353471-40353945 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 82 |
| Conread position: | 133-539 |
| Cow position: | chrX:37956752-37957174 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 44 |
| Conread position: | 137-400 |
| Cow position: | chrX:13060740-13061013 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 183-550 |
| Cow position: | chrX:27458493-27458117 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 235 |
| Conread position: | 184-449 |
| Cow position: | chrX:24952108-24951852 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 168, 29 |
| Conread position: | 184-544 |
| Cow position: | chrX:4625157-4625528 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 29 |
| Conread position: | 191-579 |
| Cow position: | chrX:37980637-37981031 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 196 |
| Conread position: | 211-526 |
| Cow position: | chrX:25921509-25921205 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 212-515 |
| Cow position: | chrX:43647477-43647173 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 118 |
| Conread position: | 218-364 |
| Cow position: | chrX:25653397-25653544 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 221-545 |
| Cow position: | chrX:4601355-4601039 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 228-404 |
| Cow position: | chrX:37067317-37067497 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 228-533 |
| Cow position: | chrX:4597423-4597091 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 228-554 |
| Cow position: | chrX:13403452-13403124 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 224 |
| Conread position: | 229-541 |
| Cow position: | chrX:4631080-4630764 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 229-547 |
| Cow position: | chrX:40698536-40698839 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 19, 69 |
| Conread position: | 229-554 |
| Cow position: | chrX:37137980-37137645 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 229-566 |
| Cow position: | chrX:11982897-11983223 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 231-551 |
| Cow position: | chrX:6472003-6472332 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 231-569 |
| Cow position: | chrX:24886485-24886155 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 232-544 |
| Cow position: | chrX:18700061-18699744 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 176 |
| Conread position: | 232-547 |
| Cow position: | chrX:19017946-19017620 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 299 |
| Conread position: | 232-551 |
| Cow position: | chrX:4440154-4440473 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 233-578 |
| Cow position: | chrX:24203485-24203854 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 234-473 |
| Cow position: | chrX:28939102-28939322 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 234-488 |
| Cow position: | chrX:4948178-4947942 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 234-565 |
| Cow position: | chrX:10534380-10534715 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 112 |
| Conread position: | 235-500 |
| Cow position: | chrX:2700805-2700537 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 235-552 |
| Cow position: | chrX:37236315-37236625 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 254-506 |
| Cow position: | chrX:18467783-18468035 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 134 |
| Conread position: | 255-465 |
| Cow position: | chrX:48428725-48428938 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 266-543 |
| Cow position: | chrX:1330464-1330184 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 104 |
| Conread position: | 271-542 |
| Cow position: | chrX:37748989-37749270 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 8 |
| Conread position: | 285-543 |
| Cow position: | chrX:4019579-4019307 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 66, 90 |
| Conread position: | 300-543 |
| Cow position: | chrX:5956968-5956725 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 55, 101 |
| Conread position: | 316-567 |
| Cow position: | chrX:11851387-11851137 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 58 |
| Conread position: | 319-545 |
| Cow position: | chrX:40350293-40350514 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 326-551 |
| Cow position: | chrX:6672170-6672401 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 330-551 |
| Cow position: | chrX:35552743-35552961 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 330-553 |
| Cow position: | chrX:44248838-44248615 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 154, 59 |
| Conread position: | 331-551 |
| Cow position: | chrX:34100416-34100629 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 333-566 |
| Cow position: | chrX:18518438-18518674 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 354-569 |
| Cow position: | chrX:1427692-1427914 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 355-565 |
| Cow position: | chrX:40342645-40342841 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 126, 43 |
| Conread position: | 356-565 |
| Cow position: | chrX:30784978-30785193 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 365-579 |
| Cow position: | chrX:7022533-7022739 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 105, 43 |
| Conread position: | 382-550 |
| Cow position: | chrX:25653535-25653706 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 392-555 |
| Cow position: | chrX:19391813-19391648 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 396-530 |
| Cow position: | chrX:30729319-30729182 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 405-554 |
| Cow position: | chrX:24286533-24286681 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 72, 79 |
| Conread position: | 408-551 |
| Cow position: | chrX:503087-502941 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 422-545 |
| Cow position: | chrX:19216433-19216308 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 422-551 |
| Cow position: | chrX:8557702-8557571 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 112 |
Show alignments to all cow chromosomes.