Cow genome map
| Conread name: | Ss1.1-Pig2-25P02.5 |
| Conread position: | 431-567 |
| Cow position: | chr1:56928915-56928778 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 86 |
| Conread position: | 431-567 |
| Cow position: | chr1:63164444-63164578 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 550-795 |
| Cow position: | chr1:89776587-89776832 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 559-801 |
| Cow position: | chr1:32501397-32501154 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 41, 7 |
| Conread position: | 561-800 |
| Cow position: | chr1:91026287-91026055 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 43, 159 |
| Conread position: | 562-791 |
| Cow position: | chr1:80315323-80315093 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 566-731 |
| Cow position: | chr1:55120219-55120381 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 566-735 |
| Cow position: | chr1:22590254-22590081 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 567-745 |
| Cow position: | chr1:23297849-23297669 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 567-778 |
| Cow position: | chr1:101440910-101441121 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 567-800 |
| Cow position: | chr1:79839473-79839699 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 568-726 |
| Cow position: | chr1:15982909-15983067 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 568-794 |
| Cow position: | chr1:48321363-48321584 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 130, 31 |
| Conread position: | 568-800 |
| Cow position: | chr1:638440-638200 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 568-802 |
| Cow position: | chr1:32496443-32496217 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 568-802 |
| Cow position: | chr1:78027610-78027847 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 568-802 |
| Cow position: | chr1:98412789-98413023 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 569-800 |
| Cow position: | chr1:5655196-5655427 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 194 |
| Conread position: | 571-800 |
| Cow position: | chr1:39297712-39297485 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 41, 139 |
| Conread position: | 571-802 |
| Cow position: | chr1:75185173-75184941 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 571-803 |
| Cow position: | chr1:29099641-29099878 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 572-749 |
| Cow position: | chr1:33881226-33881044 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 572-799 |
| Cow position: | chr1:87757337-87757559 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 574-745 |
| Cow position: | chr1:76596325-76596149 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 576-800 |
| Cow position: | chr1:98879773-98880002 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 578-794 |
| Cow position: | chr1:35434957-35434745 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 578-798 |
| Cow position: | chr1:32284906-32284692 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 583-803 |
| Cow position: | chr1:32965097-32964872 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 584-796 |
| Cow position: | chr1:55117979-55117761 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 597-802 |
| Cow position: | chr1:83120861-83120655 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 611-772 |
| Cow position: | chr1:64752985-64752823 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 42, 141 |
| Conread position: | 620-774 |
| Cow position: | chr1:95063766-95063611 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 111 |
| Conread position: | 645-802 |
| Cow position: | chr1:30086245-30086399 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 648-802 |
| Cow position: | chr1:17634862-17635018 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 648-802 |
| Cow position: | chr1:81642043-81642196 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 109, 64 |
| Conread position: | 648-803 |
| Cow position: | chr1:100140487-100140330 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 653-801 |
| Cow position: | chr1:77942715-77942862 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 659-798 |
| Cow position: | chr1:101625624-101625486 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 662-796 |
| Cow position: | chr1:22589385-22589258 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 667-802 |
| Cow position: | chr1:47365397-47365262 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 673-798 |
| Cow position: | chr1:29107367-29107492 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 687-791 |
| Cow position: | chr1:16523671-16523567 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.