Cow genome map
| Conread name: | Ss1.1-Pig2-25P02.5 |
| Conread position: | 1-172 |
| Cow position: | chr11:58669524-58669708 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 311-569 |
| Cow position: | chr11:58678208-58678478 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 159 |
| Conread position: | 513-802 |
| Cow position: | chr11:39242706-39242997 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 30, 49 |
| Conread position: | 547-800 |
| Cow position: | chr11:5144628-5144373 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 549-802 |
| Cow position: | chr11:881762-881510 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 559-756 |
| Cow position: | chr11:13857541-13857739 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 559-797 |
| Cow position: | chr11:85953214-85953440 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 561-712 |
| Cow position: | chr11:63664468-63664620 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 561-800 |
| Cow position: | chr11:9806664-9806428 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 54, 74 |
| Conread position: | 562-800 |
| Cow position: | chr11:36901594-36901348 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 64, 114 |
| Conread position: | 563-800 |
| Cow position: | chr11:51842553-51842321 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 564-759 |
| Cow position: | chr11:5187425-5187624 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 567-800 |
| Cow position: | chr11:19703109-19703347 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 567-800 |
| Cow position: | chr11:39234516-39234750 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 567-802 |
| Cow position: | chr11:37329882-37330119 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 568-759 |
| Cow position: | chr11:5252598-5252402 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 568-795 |
| Cow position: | chr11:37399127-37398904 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 568-800 |
| Cow position: | chr11:41483498-41483271 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 568-802 |
| Cow position: | chr11:37356442-37356206 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 571-796 |
| Cow position: | chr11:20423227-20423453 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 572-733 |
| Cow position: | chr11:39530505-39530667 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 572-800 |
| Cow position: | chr11:31888208-31888443 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 573-800 |
| Cow position: | chr11:6604697-6604928 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 573-802 |
| Cow position: | chr11:11682657-11682893 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 47, 192 |
| Conread position: | 575-776 |
| Cow position: | chr11:4127258-4127460 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 575-797 |
| Cow position: | chr11:8098085-8097860 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 582-802 |
| Cow position: | chr11:18167601-18167384 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 36, 166 |
| Conread position: | 615-802 |
| Cow position: | chr11:63678200-63678386 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 625-802 |
| Cow position: | chr11:7050343-7050164 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 128 |
| Conread position: | 647-783 |
| Cow position: | chr11:42057973-42058110 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 648-802 |
| Cow position: | chr11:36258988-36258842 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 648-802 |
| Cow position: | chr11:37125389-37125237 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 664-802 |
| Cow position: | chr11:72347159-72347021 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 686-800 |
| Cow position: | chr11:32390987-32391100 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 691-800 |
| Cow position: | chr11:39241301-39241410 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 692-802 |
| Cow position: | chr11:37729106-37729215 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.