Cow genome map
| Conread name: | Ss1.1-Pig2-25P02.5 |
| Conread position: | 542-802 |
| Cow position: | chr16:8786977-8786713 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 74, 57 |
| Conread position: | 555-734 |
| Cow position: | chr16:30563182-30563362 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 555-734 |
| Cow position: | chr16:31703419-31703599 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 557-747 |
| Cow position: | chr16:10250523-10250715 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 93, 42 |
| Conread position: | 560-749 |
| Cow position: | chr16:10444120-10444317 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 562-719 |
| Cow position: | chr16:36429833-36429990 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 562-800 |
| Cow position: | chr16:33147543-33147779 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 563-760 |
| Cow position: | chr16:46377448-46377257 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 36 |
| Conread position: | 564-802 |
| Cow position: | chr16:26065415-26065659 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 566-797 |
| Cow position: | chr16:56223804-56224035 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 567-790 |
| Cow position: | chr16:200221-200444 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 568-736 |
| Cow position: | chr16:44522807-44522975 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 568-749 |
| Cow position: | chr16:46545533-46545351 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 568-749 |
| Cow position: | chr16:54409174-54409355 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 47, 149 |
| Conread position: | 568-793 |
| Cow position: | chr16:49096138-49096367 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 36, 161 |
| Conread position: | 568-800 |
| Cow position: | chr16:34131653-34131422 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 568-802 |
| Cow position: | chr16:20984754-20984997 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 568-802 |
| Cow position: | chr16:50545870-50545635 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 571-790 |
| Cow position: | chr16:19262417-19262197 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 82, 175 |
| Conread position: | 571-802 |
| Cow position: | chr16:1632437-1632669 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 571-802 |
| Cow position: | chr16:35412213-35411982 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 82, 158 |
| Conread position: | 572-790 |
| Cow position: | chr16:49726152-49726377 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 576-798 |
| Cow position: | chr16:23495931-23495697 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 576-800 |
| Cow position: | chr16:7770165-7770387 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 577-745 |
| Cow position: | chr16:22245374-22245544 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 577-800 |
| Cow position: | chr16:22240132-22240350 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 579-769 |
| Cow position: | chr16:43196253-43196442 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 583-800 |
| Cow position: | chr16:37842090-37842300 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 600-737 |
| Cow position: | chr16:31140056-31139917 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 615-802 |
| Cow position: | chr16:27974813-27974621 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 76 |
| Conread position: | 619-800 |
| Cow position: | chr16:32029273-32029453 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 647-796 |
| Cow position: | chr16:23384398-23384549 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 73, 122 |
| Conread position: | 648-800 |
| Cow position: | chr16:33709605-33709754 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 662-799 |
| Cow position: | chr16:3854454-3854318 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.