Cow genome map
| Conread name: | Ss1.1-Pig2-25P02.5 |
| Conread position: | 546-802 |
| Cow position: | chr21:25592600-25592850 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 561-800 |
| Cow position: | chr21:20185956-20186205 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 562-800 |
| Cow position: | chr21:42475022-42475263 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 37 |
| Conread position: | 567-746 |
| Cow position: | chr21:46766974-46767162 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 567-760 |
| Cow position: | chr21:20172390-20172582 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 157 |
| Conread position: | 567-767 |
| Cow position: | chr21:24207826-24207624 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 49, 68 |
| Conread position: | 567-785 |
| Cow position: | chr21:35449493-35449705 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 567-802 |
| Cow position: | chr21:23639453-23639703 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 568-736 |
| Cow position: | chr21:43626483-43626652 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 568-749 |
| Cow position: | chr21:42169637-42169457 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 568-749 |
| Cow position: | chr21:43623775-43623958 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 107 |
| Conread position: | 568-772 |
| Cow position: | chr21:29200830-29200623 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 568-795 |
| Cow position: | chr21:1184549-1184776 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 59, 31 |
| Conread position: | 568-800 |
| Cow position: | chr21:41532632-41532400 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 31 |
| Conread position: | 568-802 |
| Cow position: | chr21:8851327-8851085 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 571-791 |
| Cow position: | chr21:47963259-47963476 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 572-798 |
| Cow position: | chr21:41547900-41548119 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 81, 11 |
| Conread position: | 572-800 |
| Cow position: | chr21:20785790-20786028 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 576-760 |
| Cow position: | chr21:34428594-34428408 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 169 |
| Conread position: | 576-796 |
| Cow position: | chr21:7143422-7143632 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 576-802 |
| Cow position: | chr21:24735169-24735405 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 577-773 |
| Cow position: | chr21:44722142-44721947 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 577-800 |
| Cow position: | chr21:15250073-15249855 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 596-749 |
| Cow position: | chr21:48595794-48595947 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 644-798 |
| Cow position: | chr21:12898773-12898619 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 134 |
| Conread position: | 647-802 |
| Cow position: | chr21:6326524-6326678 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 648-800 |
| Cow position: | chr21:17933686-17933843 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 98, 77 |
| Conread position: | 650-801 |
| Cow position: | chr21:7747731-7747582 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 659-800 |
| Cow position: | chr21:41569285-41569424 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 685-802 |
| Cow position: | chr21:7074081-7074196 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.