Cow genome map
| Conread name: | Ss1.1-Pig2-25P02.5 |
| Conread position: | 545-796 |
| Cow position: | chr9:56294341-56294097 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 553-801 |
| Cow position: | chr9:36426326-36426073 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 554-802 |
| Cow position: | chr9:41954281-41954037 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 561-794 |
| Cow position: | chr9:6590299-6590059 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 566-760 |
| Cow position: | chr9:8848064-8847871 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 566-801 |
| Cow position: | chr9:23518647-23518879 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 51, 190 |
| Conread position: | 566-802 |
| Cow position: | chr9:25794613-25794376 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 69 |
| Conread position: | 566-802 |
| Cow position: | chr9:44610016-44609782 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 568-749 |
| Cow position: | chr9:5478887-5478711 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 568-773 |
| Cow position: | chr9:10160157-10160361 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 568-796 |
| Cow position: | chr9:15223658-15223890 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 185 |
| Conread position: | 568-800 |
| Cow position: | chr9:6126738-6126964 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 31 |
| Conread position: | 568-800 |
| Cow position: | chr9:6133864-6134096 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 568-802 |
| Cow position: | chr9:9733201-9733438 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 131 |
| Conread position: | 571-804 |
| Cow position: | chr9:50822373-50822610 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 51, 158 |
| Conread position: | 573-800 |
| Cow position: | chr9:46090434-46090651 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 574-727 |
| Cow position: | chr9:51276014-51276173 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 575-798 |
| Cow position: | chr9:21499526-21499745 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 575-800 |
| Cow position: | chr9:63662090-63662311 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 576-802 |
| Cow position: | chr9:36396982-36396751 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 576-802 |
| Cow position: | chr9:51280067-51279836 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 578-800 |
| Cow position: | chr9:10290150-10290376 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 580-748 |
| Cow position: | chr9:54107763-54107932 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 588-794 |
| Cow position: | chr9:25574749-25574551 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 599-747 |
| Cow position: | chr9:36681922-36681768 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 17, 128 |
| Conread position: | 600-798 |
| Cow position: | chr9:61851515-61851727 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 169 |
| Conread position: | 630-760 |
| Cow position: | chr9:23520524-23520653 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 643-798 |
| Cow position: | chr9:25800519-25800369 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 647-800 |
| Cow position: | chr9:7798704-7798552 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 687-798 |
| Cow position: | chr9:25795681-25795570 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 90 |
Show alignments to all cow chromosomes.