Cow genome map
| Conread name: | Ss1.1-Pig2-25P02.5 |
| Conread position: | 554-798 |
| Cow position: | chrX:38129491-38129237 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 559-800 |
| Cow position: | chrX:33158819-33159066 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 560-799 |
| Cow position: | chrX:16893357-16893598 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 562-750 |
| Cow position: | chrX:36873985-36874175 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 565-800 |
| Cow position: | chrX:3513509-3513271 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 39, 178 |
| Conread position: | 565-802 |
| Cow position: | chrX:1743176-1742931 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 566-712 |
| Cow position: | chrX:23323258-23323113 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 566-787 |
| Cow position: | chrX:34213594-34213816 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 149, 33 |
| Conread position: | 566-800 |
| Cow position: | chrX:35981461-35981694 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 567-714 |
| Cow position: | chrX:33008382-33008530 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 568-782 |
| Cow position: | chrX:29145266-29145481 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 568-800 |
| Cow position: | chrX:3451037-3450799 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 571-737 |
| Cow position: | chrX:25179475-25179639 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 571-784 |
| Cow position: | chrX:832076-832288 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 573-802 |
| Cow position: | chrX:38740907-38741137 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 574-800 |
| Cow position: | chrX:12834757-12834978 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 25 |
| Conread position: | 576-800 |
| Cow position: | chrX:38674673-38674903 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 576-802 |
| Cow position: | chrX:27529380-27529607 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 584-802 |
| Cow position: | chrX:29815598-29815819 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 593-801 |
| Cow position: | chrX:31916610-31916404 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 598-801 |
| Cow position: | chrX:25180224-25180430 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 14, 140 |
| Conread position: | 599-799 |
| Cow position: | chrX:37251278-37251484 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 600-800 |
| Cow position: | chrX:19046258-19046068 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 71 |
| Conread position: | 611-800 |
| Cow position: | chrX:40315667-40315860 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 625-749 |
| Cow position: | chrX:29538950-29539078 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 645-800 |
| Cow position: | chrX:6999444-6999599 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 94 |
| Conread position: | 647-799 |
| Cow position: | chrX:10062092-10062244 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 647-800 |
| Cow position: | chrX:34767947-34767793 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 651-796 |
| Cow position: | chrX:34635675-34635530 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 656-802 |
| Cow position: | chrX:31910862-31910711 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 687-796 |
| Cow position: | chrX:23320402-23320511 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.