Cow genome map

Conread name: Ss1.1-Pig2-51E21.5

Conread position: 2-150
Cow position: chr10:40150803-40150953 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 77, 63

Conread position: 2-155
Cow position: chr10:54930746-54930905 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 110

Conread position: 2-162
Cow position: chr10:1378956-1378793 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 37

Conread position: 2-162
Cow position: chr10:29631338-29631505 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 50

Conread position: 2-164
Cow position: chr10:7280645-7280814 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 38, 110

Conread position: 3-160
Cow position: chr10:47788139-47787976 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 46

Conread position: 3-162
Cow position: chr10:31525214-31525062 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 4-146
Cow position: chr10:50136026-50135879 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 27, 51

Conread position: 4-155
Cow position: chr10:20375380-20375533 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 49, 36

Conread position: 4-158
Cow position: chr10:20382567-20382727 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 48

Conread position: 4-162
Cow position: chr10:29109524-29109682 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 77, 36

Conread position: 275-465
Cow position: chr10:40398331-40398145 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 129

Conread position: 281-431
Cow position: chr10:22102562-22102411 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 45, 53

Conread position: 281-497
Cow position: chr10:14805171-14804954 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 51, 153

Conread position: 282-384
Cow position: chr10:37771210-37771107 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 89
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 44, 52

Conread position: 282-396
Cow position: chr10:31525093-31524978 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 53

Conread position: 282-430
Cow position: chr10:8291261-8291112 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 44, 52

Conread position: 282-440
Cow position: chr10:57502133-57501974 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 44, 7

Conread position: 282-446
Cow position: chr10:6554-6397 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 44, 53

Conread position: 282-454
Cow position: chr10:54930879-54931043 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 65

Conread position: 282-459
Cow position: chr10:58812428-58812607 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 137, 0

Conread position: 282-465
Cow position: chr10:39778791-39778969 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 154
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 44, 52

Conread position: 282-492
Cow position: chr10:24311036-24311250 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 50, 0

Conread position: 282-496
Cow position: chr10:16926857-16926641 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 44, 52

Conread position: 282-497
Cow position: chr10:2119689-2119906 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 169
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 44, 52

Conread position: 282-497
Cow position: chr10:33870409-33870192 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 50, 0

Conread position: 282-497
Cow position: chr10:38537172-38537389 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 50, 0

Conread position: 282-497
Cow position: chr10:41568425-41568209 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 50, 0

Conread position: 282-497
Cow position: chr10:41878247-41878030 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 0

Conread position: 282-497
Cow position: chr10:44708287-44708501 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 50, 173

Conread position: 282-497
Cow position: chr10:47908258-47908043 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 50, 152

Conread position: 282-497
Cow position: chr10:50313236-50313022 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 44, 66

Conread position: 282-498
Cow position: chr10:126613-126394 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 31, 54

Conread position: 282-498
Cow position: chr10:1378824-1378616 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 44, 0

Conread position: 282-498
Cow position: chr10:29631474-29631693 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 282-498
Cow position: chr10:29845321-29845538 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 44, 90

Conread position: 282-498
Cow position: chr10:30684168-30684386 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr10:32702052-32701834 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr10:38344035-38344250 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 168
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr10:50135896-50135676 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 19

Conread position: 282-498
Cow position: chr10:57988670-57988885 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr10:62407453-62407672 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 50, 191

Conread position: 282-500
Cow position: chr10:10583441-10583221 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 44, 171

Conread position: 282-504
Cow position: chr10:20375507-20375732 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 55

Conread position: 282-505
Cow position: chr10:58928562-58928336 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 66, 55

Conread position: 282-508
Cow position: chr10:7280778-7281001 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 177
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 44, 52

Conread position: 282-509
Cow position: chr10:279283-279511 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 50, 178

Conread position: 282-516
Cow position: chr10:17433681-17433441 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 47, 0

Conread position: 282-521
Cow position: chr10:55285286-55285039 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 44, 52

Conread position: 282-521
Cow position: chr10:60361222-60360983 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 7, 23

Conread position: 283-480
Cow position: chr10:39878106-39878304 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 94

Conread position: 283-488
Cow position: chr10:42750142-42749940 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 157, 0

Conread position: 283-491
Cow position: chr10:46192388-46192182 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 49, 161

Conread position: 283-497
Cow position: chr10:41158773-41158560 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 108

Conread position: 283-498
Cow position: chr10:187414-187204 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 177, 8

Conread position: 283-498
Cow position: chr10:16478083-16477865 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 49, 21

Conread position: 283-498
Cow position: chr10:64146253-64146037 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 110

Conread position: 284-489
Cow position: chr10:42111742-42111538 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 98, 141

Conread position: 284-523
Cow position: chr10:11684309-11684549 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 42, 50

Conread position: 285-445
Cow position: chr10:51773884-51774045 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 0

Conread position: 285-453
Cow position: chr10:57556014-57556183 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 285-457
Cow position: chr10:19494968-19495139 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 43, 17

Conread position: 285-457
Cow position: chr10:21399362-21399529 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 18

Conread position: 285-477
Cow position: chr10:20382697-20382881 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 41, 52

Conread position: 285-493
Cow position: chr10:28642861-28642648 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 28, 0

Conread position: 285-494
Cow position: chr10:21739426-21739636 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 113

Conread position: 285-494
Cow position: chr10:27663945-27664151 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 47, 103

Conread position: 285-497
Cow position: chr10:7897161-7897375 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 47, 0

Conread position: 285-497
Cow position: chr10:28256095-28256306 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 41, 49

Conread position: 285-497
Cow position: chr10:39815077-39815290 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 68

Conread position: 285-497
Cow position: chr10:40150930-40151133 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 11, 50

Conread position: 285-523
Cow position: chr10:39181117-39180883 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 41, 49

Conread position: 285-526
Cow position: chr10:29109820-29110055 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 9, 125

Conread position: 286-435
Cow position: chr10:19512901-19512751 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 40, 48

Conread position: 286-495
Cow position: chr10:1665211-1665422 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 40, 48

Conread position: 286-495
Cow position: chr10:21488285-21488075 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 40, 24

Conread position: 286-497
Cow position: chr10:38849610-38849398 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 46, 103

Conread position: 286-497
Cow position: chr10:53321072-53321288 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 42, 0

Conread position: 286-497
Cow position: chr10:55094590-55094377 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 46, 65

Conread position: 286-498
Cow position: chr10:14334525-14334739 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 40, 48

Conread position: 286-506
Cow position: chr10:51782094-51782309 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 63

Conread position: 286-526
Cow position: chr10:29011332-29011569 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 40, 215

Conread position: 287-495
Cow position: chr10:31472079-31471874 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 45, 18

Conread position: 287-497
Cow position: chr10:38544606-38544811 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 168
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 45, 142

Conread position: 287-504
Cow position: chr10:32558667-32558449 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 95

Conread position: 288-491
Cow position: chr10:36469133-36469333 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 161
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 32

Conread position: 289-451
Cow position: chr10:28946800-28946638 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 37, 58

Conread position: 290-491
Cow position: chr10:32430047-32429844 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 42, 96

Conread position: 291-498
Cow position: chr10:40641277-40641069 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 40, 35

Conread position: 295-493
Cow position: chr10:42641904-42641710 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 37, 138

Conread position: 295-497
Cow position: chr10:19840994-19840792 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 37, 114

Conread position: 295-497
Cow position: chr10:42752450-42752240 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 298-498
Cow position: chr10:20369767-20369968 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 34, 14

Conread position: 299-510
Cow position: chr10:14843088-14842881 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 33, 87

Conread position: 300-488
Cow position: chr10:8326026-8326203 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 49

Conread position: 300-528
Cow position: chr10:21481240-21481015 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 32, 105

Conread position: 303-498
Cow position: chr10:57406604-57406803 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 32

Conread position: 305-489
Cow position: chr10:48397797-48397981 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 21, 29

Conread position: 305-498
Cow position: chr10:39039994-39040188 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 21, 29

Conread position: 305-526
Cow position: chr10:51843892-51844106 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 27, 89

Conread position: 331-505
Cow position: chr10:3541798-3541966 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 73

Conread position: 331-516
Cow position: chr10:24976500-24976682 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 130, 54

Conread position: 348-507
Cow position: chr10:22583761-22583920 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 115, 85

Conread position: 349-493
Cow position: chr10:28928706-28928847 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 35

Show alignments to all cow chromosomes.