Cow genome map
| Conread name: | Ss1.1-Pig2-51E21.5 |
| Conread position: | 2-144 |
| Cow position: | chr13:42090524-42090671 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 109 |
| Conread position: | 2-161 |
| Cow position: | chr13:43590491-43590333 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 34 |
| Conread position: | 2-162 |
| Cow position: | chr13:30239482-30239319 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 76, 43 |
| Conread position: | 2-162 |
| Cow position: | chr13:30654227-30654395 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 2-162 |
| Cow position: | chr13:34908864-34909021 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 79 |
| Conread position: | 2-162 |
| Cow position: | chr13:35758453-35758284 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 151 |
| Conread position: | 3-143 |
| Cow position: | chr13:30011652-30011796 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 78, 36 |
| Conread position: | 3-158 |
| Cow position: | chr13:34938610-34938446 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 37, 142 |
| Conread position: | 21-162 |
| Cow position: | chr13:11797576-11797724 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 282-378 |
| Cow position: | chr13:34908990-34909087 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 51 |
| Conread position: | 282-496 |
| Cow position: | chr13:15543574-15543358 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-497 |
| Cow position: | chr13:31729862-31730079 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-497 |
| Cow position: | chr13:32984310-32984527 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-497 |
| Cow position: | chr13:34324522-34324739 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 282-497 |
| Cow position: | chr13:47228967-47229185 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-498 |
| Cow position: | chr13:3653286-3653504 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-498 |
| Cow position: | chr13:4484822-4484611 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 282-498 |
| Cow position: | chr13:9045799-9045585 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr13:15923349-15923564 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 44, 53 |
| Conread position: | 282-498 |
| Cow position: | chr13:30304327-30304109 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 282-498 |
| Cow position: | chr13:31611278-31611492 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 282-498 |
| Cow position: | chr13:48358674-48358459 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 282-505 |
| Cow position: | chr13:16254352-16254575 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 282-507 |
| Cow position: | chr13:14177810-14178031 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 111 |
| Conread position: | 282-516 |
| Cow position: | chr13:30239350-30239118 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 111 |
| Conread position: | 282-525 |
| Cow position: | chr13:23001976-23002218 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 282-525 |
| Cow position: | chr13:43590363-43590125 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-526 |
| Cow position: | chr13:13325961-13325719 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 50, 106 |
| Conread position: | 282-526 |
| Cow position: | chr13:35758315-35758075 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 283-485 |
| Cow position: | chr13:31555707-31555915 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 283-489 |
| Cow position: | chr13:21908061-21908273 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 28, 86 |
| Conread position: | 284-497 |
| Cow position: | chr13:50110483-50110268 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 284-509 |
| Cow position: | chr13:11797687-11797915 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 285-446 |
| Cow position: | chr13:28860193-28860031 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-453 |
| Cow position: | chr13:17998587-17998418 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-463 |
| Cow position: | chr13:34030648-34030472 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 285-465 |
| Cow position: | chr13:49974694-49974514 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 47, 164 |
| Conread position: | 285-472 |
| Cow position: | chr13:57024724-57024540 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 103 |
| Conread position: | 285-494 |
| Cow position: | chr13:678779-678569 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 133 |
| Conread position: | 285-494 |
| Cow position: | chr13:17309499-17309292 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 36, 68 |
| Conread position: | 285-494 |
| Cow position: | chr13:21697282-21697071 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-494 |
| Cow position: | chr13:42217882-42218093 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-498 |
| Cow position: | chr13:14402067-14402282 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-498 |
| Cow position: | chr13:25692706-25692497 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 285-505 |
| Cow position: | chr13:43982072-43982289 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 104 |
| Conread position: | 285-507 |
| Cow position: | chr13:6667102-6667326 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-509 |
| Cow position: | chr13:34938477-34938268 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 285-519 |
| Cow position: | chr13:11794027-11794247 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 285-521 |
| Cow position: | chr13:44652786-44653022 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 285-523 |
| Cow position: | chr13:2387778-2388016 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 210 |
| Conread position: | 286-440 |
| Cow position: | chr13:50661330-50661176 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 46, 107 |
| Conread position: | 286-494 |
| Cow position: | chr13:60467356-60467146 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 286-495 |
| Cow position: | chr13:4942412-4942202 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 286-497 |
| Cow position: | chr13:31732861-31733072 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 286-498 |
| Cow position: | chr13:34041309-34041521 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 286-509 |
| Cow position: | chr13:13900894-13900672 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 286-522 |
| Cow position: | chr13:32546419-32546180 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 288-509 |
| Cow position: | chr13:15450092-15450314 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 8, 169 |
| Conread position: | 290-497 |
| Cow position: | chr13:21839169-21839385 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 293-526 |
| Cow position: | chr13:42202220-42202452 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 294-505 |
| Cow position: | chr13:5624966-5625180 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 302-525 |
| Cow position: | chr13:1592141-1592361 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 303-498 |
| Cow position: | chr13:17330751-17330946 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 164, 64 |
| Conread position: | 304-440 |
| Cow position: | chr13:57823678-57823814 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 311-498 |
| Cow position: | chr13:32736821-32737008 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 325-498 |
| Cow position: | chr13:34153770-34153946 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 97, 7 |
| Conread position: | 331-518 |
| Cow position: | chr13:6758958-6758770 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 355-498 |
| Cow position: | chr13:30654420-30654564 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 68, 82 |
| Conread position: | 374-505 |
| Cow position: | chr13:34765519-34765648 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 95, 84 |
| Conread position: | 374-527 |
| Cow position: | chr13:26844951-26844800 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 48 |
Show alignments to all cow chromosomes.