Cow genome map
| Conread name: | Ss1.1-Pig2-51E21.5 |
| Conread position: | 1-155 |
| Cow position: | chr17:20099199-20099356 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 2-155 |
| Cow position: | chr17:33284573-33284722 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-164 |
| Cow position: | chr17:1786689-1786850 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 3-167 |
| Cow position: | chr17:20086494-20086668 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 4-162 |
| Cow position: | chr17:14039774-14039942 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 5-164 |
| Cow position: | chr17:2077724-2077895 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 5-165 |
| Cow position: | chr17:20080611-20080771 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 137, 44 |
| Conread position: | 270-504 |
| Cow position: | chr17:4083172-4082930 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 62, 185 |
| Conread position: | 276-498 |
| Cow position: | chr17:15372364-15372149 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 90, 53 |
| Conread position: | 279-497 |
| Cow position: | chr17:15324969-15324751 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 279-525 |
| Cow position: | chr17:16856378-16856622 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 282-426 |
| Cow position: | chr17:12669287-12669431 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 50, 92 |
| Conread position: | 282-437 |
| Cow position: | chr17:27793641-27793797 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-451 |
| Cow position: | chr17:13675147-13675322 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 282-451 |
| Cow position: | chr17:42266554-42266384 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-452 |
| Cow position: | chr17:33284696-33284867 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 146 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 282-495 |
| Cow position: | chr17:2077859-2078077 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-497 |
| Cow position: | chr17:1703558-1703771 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-497 |
| Cow position: | chr17:1786817-1787018 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 282-497 |
| Cow position: | chr17:6120853-6120636 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 282-497 |
| Cow position: | chr17:15142218-15142425 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 147 |
| Conread position: | 282-497 |
| Cow position: | chr17:20080733-20080952 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 53 |
| Conread position: | 282-497 |
| Cow position: | chr17:22559107-22558892 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 50, 184 |
| Conread position: | 282-497 |
| Cow position: | chr17:24783299-24783081 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-497 |
| Cow position: | chr17:43989639-43989421 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-498 |
| Cow position: | chr17:4061235-4061017 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr17:6069686-6069476 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 282-498 |
| Cow position: | chr17:11086589-11086800 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr17:14240637-14240419 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr17:18194944-18194730 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 138 |
| Conread position: | 282-498 |
| Cow position: | chr17:19267689-19267908 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr17:20099330-20099551 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr17:21418710-21418500 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 114 |
| Conread position: | 282-498 |
| Cow position: | chr17:24028860-24029083 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 282-498 |
| Cow position: | chr17:40805945-40805730 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-509 |
| Cow position: | chr17:2149577-2149342 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 9 |
| Conread position: | 282-509 |
| Cow position: | chr17:4941579-4941807 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 141 |
| Conread position: | 282-509 |
| Cow position: | chr17:22133336-22133116 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 50, 104 |
| Conread position: | 282-522 |
| Cow position: | chr17:20086629-20086853 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 183, 50 |
| Conread position: | 282-524 |
| Cow position: | chr17:15851826-15851587 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-525 |
| Cow position: | chr17:6260998-6260756 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-526 |
| Cow position: | chr17:150747-151003 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-526 |
| Cow position: | chr17:2580761-2580518 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 282-526 |
| Cow position: | chr17:20403567-20403324 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 48 |
| Conread position: | 283-498 |
| Cow position: | chr17:2174939-2174730 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 284-428 |
| Cow position: | chr17:39049130-39048985 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 284-428 |
| Cow position: | chr17:39049349-39049204 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 284-521 |
| Cow position: | chr17:5227760-5227528 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 285-403 |
| Cow position: | chr17:21769873-21769993 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-441 |
| Cow position: | chr17:8203089-8202932 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-447 |
| Cow position: | chr17:15436916-15436753 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-453 |
| Cow position: | chr17:182710-182541 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-494 |
| Cow position: | chr17:3655159-3655370 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-494 |
| Cow position: | chr17:6611353-6611564 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-494 |
| Cow position: | chr17:11783988-11783764 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-494 |
| Cow position: | chr17:20389952-20390163 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-494 |
| Cow position: | chr17:31766903-31767116 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 285-495 |
| Cow position: | chr17:14039906-14040120 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 285-495 |
| Cow position: | chr17:19020713-19020496 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 285-497 |
| Cow position: | chr17:2263242-2263031 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 47, 183 |
| Conread position: | 285-497 |
| Cow position: | chr17:34157254-34157040 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-509 |
| Cow position: | chr17:54310-54537 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-523 |
| Cow position: | chr17:23323318-23323550 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 287-497 |
| Cow position: | chr17:14215895-14216107 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 288-521 |
| Cow position: | chr17:9080290-9080523 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 44, 213 |
| Conread position: | 295-475 |
| Cow position: | chr17:17067370-17067189 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 31, 62 |
| Conread position: | 295-498 |
| Cow position: | chr17:37017-36813 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 143 |
| Conread position: | 296-498 |
| Cow position: | chr17:14895296-14895095 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 299-498 |
| Cow position: | chr17:16121435-16121621 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 305-498 |
| Cow position: | chr17:1881216-1881020 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 319-505 |
| Cow position: | chr17:239438-239263 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 74 |
| Conread position: | 330-507 |
| Cow position: | chr17:31533298-31533124 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 137, 62 |
| Conread position: | 341-498 |
| Cow position: | chr17:20489020-20488860 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.