Cow genome map
| Conread name: | Ss1.1-Pig2-51E21.5 |
| Conread position: | 2-143 |
| Cow position: | chr18:54170026-54170177 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 2-162 |
| Cow position: | chr18:36510097-36509930 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 149 |
| Conread position: | 2-165 |
| Cow position: | chr18:25921462-25921289 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 281-496 |
| Cow position: | chr18:25352605-25352388 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 282-433 |
| Cow position: | chr18:51482217-51482065 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-440 |
| Cow position: | chr18:38342945-38343102 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 106 |
| Conread position: | 282-454 |
| Cow position: | chr18:36255577-36255750 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 282-468 |
| Cow position: | chr18:54170163-54170349 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 282-493 |
| Cow position: | chr18:37507304-37507092 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 282-495 |
| Cow position: | chr18:14417325-14417112 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 44 |
| Conread position: | 282-495 |
| Cow position: | chr18:51343033-51342819 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 282-496 |
| Cow position: | chr18:29238243-29238036 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 282-497 |
| Cow position: | chr18:16080019-16079801 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 282-497 |
| Cow position: | chr18:19353711-19353491 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 282-497 |
| Cow position: | chr18:23798994-23798780 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-497 |
| Cow position: | chr18:33270290-33270079 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 50, 106 |
| Conread position: | 282-497 |
| Cow position: | chr18:47742850-47742633 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-498 |
| Cow position: | chr18:14131741-14131523 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 282-498 |
| Cow position: | chr18:27836962-27837180 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr18:28972540-28972754 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 282-498 |
| Cow position: | chr18:29865263-29865479 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr18:41839470-41839678 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 282-498 |
| Cow position: | chr18:52652257-52652039 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr18:54022783-54023002 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-527 |
| Cow position: | chr18:40345057-40345305 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 283-490 |
| Cow position: | chr18:42515551-42515333 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 283-491 |
| Cow position: | chr18:51614305-51614511 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 284-491 |
| Cow position: | chr18:18528442-18528231 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 284-491 |
| Cow position: | chr18:51624963-51625163 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 65 |
| Conread position: | 285-466 |
| Cow position: | chr18:32769095-32768912 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-468 |
| Cow position: | chr18:29074330-29074149 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 285-495 |
| Cow position: | chr18:51461708-51461920 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-498 |
| Cow position: | chr18:16175274-16175486 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 101 |
| Conread position: | 285-498 |
| Cow position: | chr18:54004827-54005042 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-521 |
| Cow position: | chr18:40081068-40081304 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 286-446 |
| Cow position: | chr18:11273773-11273934 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 286-494 |
| Cow position: | chr18:51661684-51661475 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 286-498 |
| Cow position: | chr18:40479737-40479523 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 287-494 |
| Cow position: | chr18:26246845-26246639 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 45, 99 |
| Conread position: | 294-525 |
| Cow position: | chr18:56013911-56013682 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 166, 43 |
| Conread position: | 295-464 |
| Cow position: | chr18:37663679-37663510 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 296-513 |
| Cow position: | chr18:33751591-33751374 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 305-505 |
| Cow position: | chr18:46867576-46867779 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 331-498 |
| Cow position: | chr18:51274750-51274916 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 339-504 |
| Cow position: | chr18:20834581-20834416 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 126, 65 |
| Conread position: | 344-498 |
| Cow position: | chr18:36509626-36509472 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 120, 6 |
| Conread position: | 373-496 |
| Cow position: | chr18:16137836-16137960 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 31 |
Show alignments to all cow chromosomes.