Cow genome map
| Conread name: | Ss1.1-Pig2-51E21.5 |
| Conread position: | 2-148 |
| Cow position: | chr19:30756702-30756552 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 2-158 |
| Cow position: | chr19:1587756-1587919 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 2-162 |
| Cow position: | chr19:33653244-33653406 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 104 |
| Conread position: | 2-162 |
| Cow position: | chr19:50724037-50723867 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 2-164 |
| Cow position: | chr19:28405224-28405387 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 54 |
| Conread position: | 4-162 |
| Cow position: | chr19:5900026-5900191 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 5-162 |
| Cow position: | chr19:40816027-40816192 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 282-409 |
| Cow position: | chr19:21339371-21339498 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 282-452 |
| Cow position: | chr19:376374-376540 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 282-457 |
| Cow position: | chr19:32210724-32210899 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 167 |
| Conread position: | 282-463 |
| Cow position: | chr19:25924677-25924502 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 282-477 |
| Cow position: | chr19:3174166-3173968 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 282-492 |
| Cow position: | chr19:5900160-5900371 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-494 |
| Cow position: | chr19:3139280-3139069 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 282-497 |
| Cow position: | chr19:39649-39433 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 282-497 |
| Cow position: | chr19:167207-167424 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 282-497 |
| Cow position: | chr19:773951-773735 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 100 |
| Conread position: | 282-497 |
| Cow position: | chr19:7343419-7343202 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-497 |
| Cow position: | chr19:33874777-33874560 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr19:7489702-7489484 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr19:24294461-24294243 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 282-498 |
| Cow position: | chr19:28580311-28580529 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr19:28594890-28594685 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 282-498 |
| Cow position: | chr19:39391860-39391643 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 44, 53 |
| Conread position: | 282-505 |
| Cow position: | chr19:4386969-4386740 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 282-508 |
| Cow position: | chr19:28405354-28405580 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 43 |
| Conread position: | 282-509 |
| Cow position: | chr19:135439-135670 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 157 |
| Conread position: | 282-523 |
| Cow position: | chr19:173607-173365 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-523 |
| Cow position: | chr19:30756571-30756330 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 282-525 |
| Cow position: | chr19:438089-438326 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 283-491 |
| Cow position: | chr19:48860862-48861062 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 103 |
| Conread position: | 283-494 |
| Cow position: | chr19:35384266-35384475 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 97, 37 |
| Conread position: | 283-495 |
| Cow position: | chr19:50723902-50723690 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 283-498 |
| Cow position: | chr19:6713378-6713587 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 283-498 |
| Cow position: | chr19:40886372-40886587 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 23, 126 |
| Conread position: | 283-509 |
| Cow position: | chr19:11521827-11522042 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 284-494 |
| Cow position: | chr19:33527461-33527249 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 284-497 |
| Cow position: | chr19:40816163-40816378 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 284-525 |
| Cow position: | chr19:39096496-39096254 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 96 |
| Conread position: | 285-494 |
| Cow position: | chr19:20106076-20105863 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 285-494 |
| Cow position: | chr19:43145061-43144850 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 285-497 |
| Cow position: | chr19:32181728-32181944 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 285-497 |
| Cow position: | chr19:52150337-52150551 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-498 |
| Cow position: | chr19:39184193-39184404 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-526 |
| Cow position: | chr19:32194374-32194134 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 212 |
| Conread position: | 286-444 |
| Cow position: | chr19:5249391-5249550 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 129 |
| Conread position: | 286-459 |
| Cow position: | chr19:9706806-9706985 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 155 |
| Conread position: | 286-498 |
| Cow position: | chr19:342585-342372 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 133, 7 |
| Conread position: | 286-498 |
| Cow position: | chr19:892278-892489 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 286-498 |
| Cow position: | chr19:5730219-5730004 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 286-498 |
| Cow position: | chr19:40851102-40851316 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 286-505 |
| Cow position: | chr19:1489653-1489872 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 287-497 |
| Cow position: | chr19:32204640-32204429 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 9, 72 |
| Conread position: | 288-465 |
| Cow position: | chr19:1587891-1588063 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 288-465 |
| Cow position: | chr19:33653380-33653558 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 288-509 |
| Cow position: | chr19:32220260-32220483 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 294-498 |
| Cow position: | chr19:256602-256396 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 295-456 |
| Cow position: | chr19:161791-161957 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 295-490 |
| Cow position: | chr19:39667191-39667389 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 295-509 |
| Cow position: | chr19:42583299-42583515 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 307-524 |
| Cow position: | chr19:1656754-1656541 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 121 |
| Conread position: | 308-498 |
| Cow position: | chr19:12774437-12774248 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 309-498 |
| Cow position: | chr19:2273057-2273251 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 311-523 |
| Cow position: | chr19:264721-264502 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 318-458 |
| Cow position: | chr19:27050847-27050989 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 318-508 |
| Cow position: | chr19:28367322-28367132 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 130, 21 |
| Conread position: | 331-526 |
| Cow position: | chr19:74960-75157 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 133, 154 |
| Conread position: | 362-498 |
| Cow position: | chr19:23377085-23376947 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.