Cow genome map
| Conread name: | Ss1.1-Pig2-51E21.5 |
| Conread position: | 1-162 |
| Cow position: | chr20:12436974-12437141 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 149 |
| Conread position: | 2-140 |
| Cow position: | chr20:24615446-24615592 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 2-143 |
| Cow position: | chr20:16178317-16178470 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 2-155 |
| Cow position: | chr20:19341078-19340921 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 76, 33 |
| Conread position: | 2-162 |
| Cow position: | chr20:15066912-15066749 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 4-135 |
| Cow position: | chr20:9520692-9520832 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 4-162 |
| Cow position: | chr20:13678601-13678766 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 281-435 |
| Cow position: | chr20:15293301-15293147 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 281-491 |
| Cow position: | chr20:14869645-14869859 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 281-495 |
| Cow position: | chr20:19356081-19355863 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 282-400 |
| Cow position: | chr20:32120646-32120527 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 282-465 |
| Cow position: | chr20:10854027-10854210 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 172 |
| Conread position: | 282-472 |
| Cow position: | chr20:17660431-17660625 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-488 |
| Cow position: | chr20:10839421-10839620 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 282-497 |
| Cow position: | chr20:8973508-8973723 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 50, 111 |
| Conread position: | 282-497 |
| Cow position: | chr20:13678735-13678955 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 282-497 |
| Cow position: | chr20:15066780-15066575 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 92 |
| Conread position: | 282-497 |
| Cow position: | chr20:15096586-15096786 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 282-497 |
| Cow position: | chr20:19439226-19439010 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-497 |
| Cow position: | chr20:27870515-27870298 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 282-497 |
| Cow position: | chr20:35125804-35125588 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 282-498 |
| Cow position: | chr20:12569834-12569615 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 282-498 |
| Cow position: | chr20:13764209-13763998 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 282-498 |
| Cow position: | chr20:16178456-16178673 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 282-498 |
| Cow position: | chr20:21395231-21395025 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr20:22210350-22210145 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 282-498 |
| Cow position: | chr20:23468351-23468569 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr20:23800195-23799977 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 282-498 |
| Cow position: | chr20:29949828-29949611 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-504 |
| Cow position: | chr20:27338510-27338297 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 69 |
| Conread position: | 282-521 |
| Cow position: | chr20:30686884-30686647 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-525 |
| Cow position: | chr20:25849510-25849750 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-526 |
| Cow position: | chr20:9520826-9521062 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 50, 104 |
| Conread position: | 282-526 |
| Cow position: | chr20:21915943-21915701 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 282-526 |
| Cow position: | chr20:28564274-28564513 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 283-486 |
| Cow position: | chr20:13499423-13499213 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 283-488 |
| Cow position: | chr20:9344279-9344071 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 283-498 |
| Cow position: | chr20:8216824-8216608 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 284-465 |
| Cow position: | chr20:5229204-5229387 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 285-453 |
| Cow position: | chr20:30429578-30429410 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 47, 120 |
| Conread position: | 285-457 |
| Cow position: | chr20:40259608-40259436 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 47, 164 |
| Conread position: | 285-494 |
| Cow position: | chr20:28162124-28161920 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-525 |
| Cow position: | chr20:5536245-5536004 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-526 |
| Cow position: | chr20:824079-823839 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 286-465 |
| Cow position: | chr20:13787366-13787186 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 286-490 |
| Cow position: | chr20:32349574-32349369 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 286-503 |
| Cow position: | chr20:18314040-18314258 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 287-526 |
| Cow position: | chr20:2787842-2788084 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 39, 121 |
| Conread position: | 294-468 |
| Cow position: | chr20:5791638-5791462 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 295-481 |
| Cow position: | chr20:35106090-35105901 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 300-497 |
| Cow position: | chr20:37581507-37581308 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 325-525 |
| Cow position: | chr20:12437447-12437638 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 139, 7 |
Show alignments to all cow chromosomes.