Cow genome map

Conread name: Ss1.1-Pig2-51E21.5

Conread position: 2-140
Cow position: chr21:28613886-28613736 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 2-150
Cow position: chr21:27567304-27567158 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 34

Conread position: 2-162
Cow position: chr21:2417771-2417607 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 29, 50

Conread position: 2-162
Cow position: chr21:20743065-20743221 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 49

Conread position: 2-162
Cow position: chr21:30597920-30598087 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 38, 147

Conread position: 2-164
Cow position: chr21:27285027-27284856 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 49, 35

Conread position: 3-143
Cow position: chr21:45783033-45782889 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 71

Conread position: 4-153
Cow position: chr21:2673412-2673566 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 111

Conread position: 4-162
Cow position: chr21:4185475-4185313 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 27, 47

Conread position: 5-155
Cow position: chr21:47942504-47942345 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 47

Conread position: 11-154
Cow position: chr21:2712467-2712326 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 131, 31

Conread position: 277-521
Cow position: chr21:26849588-26849834 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 6, 223

Conread position: 281-506
Cow position: chr21:4716441-4716217 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 157

Conread position: 282-447
Cow position: chr21:10568127-10567961 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 44, 52

Conread position: 282-454
Cow position: chr21:4185344-4185177 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 142
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 42, 0

Conread position: 282-465
Cow position: chr21:28256849-28256665 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 44, 0

Conread position: 282-490
Cow position: chr21:5012281-5012489 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 16, 71

Conread position: 282-497
Cow position: chr21:3780194-3779976 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 44, 52

Conread position: 282-497
Cow position: chr21:39426485-39426269 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr21:147350-147138 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr21:1193179-1192964 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr21:2417638-2417422 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 59

Conread position: 282-498
Cow position: chr21:5839839-5840057 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr21:26402064-26402280 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr21:30598056-30598272 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr21:33253605-33253388 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 44, 12

Conread position: 282-498
Cow position: chr21:37372662-37372445 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr21:47646753-47646538 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 44, 52

Conread position: 282-498
Cow position: chr21:47942371-47942155 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 44, 52

Conread position: 282-506
Cow position: chr21:218448-218228 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 44, 15

Conread position: 282-506
Cow position: chr21:468280-468055 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 141

Conread position: 282-508
Cow position: chr21:10851508-10851282 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 44, 29

Conread position: 282-509
Cow position: chr21:361096-360853 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 50, 28

Conread position: 282-509
Cow position: chr21:26836320-26836094 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 44, 29

Conread position: 282-521
Cow position: chr21:1286778-1287016 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 36, 147

Conread position: 282-523
Cow position: chr21:18817124-18817365 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 67

Conread position: 282-523
Cow position: chr21:31514892-31515135 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 52

Conread position: 282-525
Cow position: chr21:27069540-27069782 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 44, 52

Conread position: 282-525
Cow position: chr21:35145183-35144938 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 44, 52

Conread position: 282-526
Cow position: chr21:27284892-27284651 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 44, 52

Conread position: 282-527
Cow position: chr21:26237553-26237313 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 163
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 283-465
Cow position: chr21:34001255-34001431 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 283-498
Cow position: chr21:4078199-4077991 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 43, 51

Conread position: 284-470
Cow position: chr21:36979494-36979681 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 284-494
Cow position: chr21:34822790-34823002 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 284-498
Cow position: chr21:2673582-2673798 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 48, 5

Conread position: 285-439
Cow position: chr21:29625299-29625455 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 285-457
Cow position: chr21:7063923-7063751 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 47, 164

Conread position: 285-457
Cow position: chr21:12054596-12054769 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 47, 67

Conread position: 285-457
Cow position: chr21:26635735-26635905 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 104

Conread position: 285-491
Cow position: chr21:30494-30292 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 50

Conread position: 285-494
Cow position: chr21:11452130-11452334 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 26, 150

Conread position: 285-494
Cow position: chr21:27035978-27036189 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 47, 0

Conread position: 285-494
Cow position: chr21:40683024-40683234 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 47, 66

Conread position: 285-495
Cow position: chr21:11507033-11506820 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 47, 0

Conread position: 285-497
Cow position: chr21:2512268-2512055 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 41, 49

Conread position: 285-505
Cow position: chr21:45782905-45782683 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 11, 117

Conread position: 286-447
Cow position: chr21:37718489-37718644 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 69

Conread position: 286-496
Cow position: chr21:3169810-3169604 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 12, 45

Conread position: 288-495
Cow position: chr21:42914783-42914578 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 147

Conread position: 288-509
Cow position: chr21:28985524-28985307 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 145

Conread position: 293-526
Cow position: chr21:21916101-21915869 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 180
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 39, 158

Conread position: 294-526
Cow position: chr21:4588565-4588805 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 186
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 32, 38

Conread position: 295-495
Cow position: chr21:37149443-37149249 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 39, 0

Conread position: 295-498
Cow position: chr21:9893304-9893104 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 37, 112

Conread position: 295-509
Cow position: chr21:2712347-2712143 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 38, 87

Conread position: 303-498
Cow position: chr21:21520003-21519817 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 29, 156

Conread position: 305-498
Cow position: chr21:40270272-40270466 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 159
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 20, 28

Conread position: 313-525
Cow position: chr21:28736568-28736361 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 13, 21

Conread position: 314-525
Cow position: chr21:2882346-2882552 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 12, 20

Conread position: 325-497
Cow position: chr21:28613727-28613554 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 140, 7

Conread position: 334-525
Cow position: chr21:30562849-30562669 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 130, 51

Conread position: 344-516
Cow position: chr21:27567114-27566933 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.