Cow genome map
| Conread name: | Ss1.1-Pig2-51E21.5 |
| Conread position: | 2-162 |
| Cow position: | chr23:4818410-4818243 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 38, 149 |
| Conread position: | 2-162 |
| Cow position: | chr23:4890073-4889907 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 2-162 |
| Cow position: | chr23:16055158-16054992 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 2-486 |
| Cow position: | chr23:22942608-22943102 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 5-165 |
| Cow position: | chr23:16613793-16613962 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 5-167 |
| Cow position: | chr23:29450967-29451139 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 26-162 |
| Cow position: | chr23:25682600-25682741 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 281-523 |
| Cow position: | chr23:28025904-28025671 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 180, 24 |
| Conread position: | 282-436 |
| Cow position: | chr23:1957137-1956982 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-455 |
| Cow position: | chr23:23282479-23282307 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 156 |
| Conread position: | 282-488 |
| Cow position: | chr23:618220-618425 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 282-495 |
| Cow position: | chr23:2794007-2794218 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 44, 6 |
| Conread position: | 282-496 |
| Cow position: | chr23:1022709-1022923 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 282-497 |
| Cow position: | chr23:2780714-2780933 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 282-497 |
| Cow position: | chr23:4889938-4889721 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-497 |
| Cow position: | chr23:15526817-15526605 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 51 |
| Conread position: | 282-497 |
| Cow position: | chr23:28218672-28218453 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-498 |
| Cow position: | chr23:2025831-2026046 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr23:2576662-2576462 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 282-498 |
| Cow position: | chr23:4818274-4818056 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr23:5873325-5873543 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 95 |
| Conread position: | 282-498 |
| Cow position: | chr23:11780032-11779819 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-498 |
| Cow position: | chr23:14963802-14964011 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-508 |
| Cow position: | chr23:29451100-29451326 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 136 |
| Conread position: | 282-509 |
| Cow position: | chr23:16497988-16498214 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-522 |
| Cow position: | chr23:15178325-15178091 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-523 |
| Cow position: | chr23:14972723-14972966 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-523 |
| Cow position: | chr23:19949339-19949580 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 50, 219 |
| Conread position: | 282-525 |
| Cow position: | chr23:2759142-2758901 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 218 |
| Conread position: | 282-525 |
| Cow position: | chr23:21243488-21243732 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 282-526 |
| Cow position: | chr23:19490795-19490554 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 282-526 |
| Cow position: | chr23:26159458-26159707 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 282-527 |
| Cow position: | chr23:2342345-2342090 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 44, 7 |
| Conread position: | 283-450 |
| Cow position: | chr23:11076933-11077104 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 283-491 |
| Cow position: | chr23:30237519-30237309 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 284-497 |
| Cow position: | chr23:15876320-15876533 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 285-431 |
| Cow position: | chr23:19451396-19451249 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 285-440 |
| Cow position: | chr23:37716751-37716597 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 135 |
| Conread position: | 285-494 |
| Cow position: | chr23:14923050-14923261 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-494 |
| Cow position: | chr23:23171750-23171539 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 285-494 |
| Cow position: | chr23:41141981-41142192 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 285-497 |
| Cow position: | chr23:3879836-3880050 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-498 |
| Cow position: | chr23:13512358-13512146 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 285-498 |
| Cow position: | chr23:22146062-22146277 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-498 |
| Cow position: | chr23:25682705-25682905 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 11, 150 |
| Conread position: | 285-525 |
| Cow position: | chr23:965249-965482 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 285-525 |
| Cow position: | chr23:38581961-38581738 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 286-436 |
| Cow position: | chr23:31648774-31648928 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 286-468 |
| Cow position: | chr23:17878868-17879057 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 286-497 |
| Cow position: | chr23:780776-780982 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 181, 25 |
| Conread position: | 286-498 |
| Cow position: | chr23:3707373-3707158 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 286-498 |
| Cow position: | chr23:28367278-28367491 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 40, 152 |
| Conread position: | 286-505 |
| Cow position: | chr23:14777711-14777931 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 152 |
| Conread position: | 287-525 |
| Cow position: | chr23:5739110-5739345 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 287-526 |
| Cow position: | chr23:27400769-27400533 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 39, 47 |
| Conread position: | 287-526 |
| Cow position: | chr23:38669616-38669854 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 182, 100 |
| Conread position: | 288-497 |
| Cow position: | chr23:4361269-4361059 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 295-491 |
| Cow position: | chr23:6220493-6220294 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 305-498 |
| Cow position: | chr23:22167900-22167707 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 311-498 |
| Cow position: | chr23:7369748-7369559 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 128 |
| Conread position: | 311-498 |
| Cow position: | chr23:36030155-36030341 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 312-497 |
| Cow position: | chr23:28108899-28108714 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 312-498 |
| Cow position: | chr23:27971753-27971569 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 14, 112 |
| Conread position: | 312-498 |
| Cow position: | chr23:28078866-28078680 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 314-523 |
| Cow position: | chr23:20154993-20155204 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 325-498 |
| Cow position: | chr23:4639420-4639589 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 139, 7 |
| Conread position: | 361-505 |
| Cow position: | chr23:8287204-8287059 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 371-527 |
| Cow position: | chr23:16614275-16614422 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.