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Cow genome map

           
Conread name:
           
Ss1.1-Pig2-55M18.5
        

               
Conread position:
               
304-557
               

               
Cow position:
               
chr1:93554723-93554969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
306-548
               

               
Cow position:
               
chr1:78068180-78067946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
308-557
               

               
Cow position:
               
chr1:77232688-77232445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
310-543
               

               
Cow position:
               
chr1:75141889-75142117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
310-564
               

               
Cow position:
               
chr1:36578421-36578656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
328-568
               

               
Cow position:
               
chr1:98461194-98461429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
231, 49
               

               
Conread position:
               
328-635
               

               
Cow position:
               
chr1:69678421-69678108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
22, 26
               

               
Conread position:
               
332-557
               

               
Cow position:
               
chr1:37707063-37706842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
333-547
               

               
Cow position:
               
chr1:46218483-46218696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 116
               

               
Conread position:
               
334-507
               

               
Cow position:
               
chr1:92437085-92436907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 97
               

               
Conread position:
               
340-641
               

               
Cow position:
               
chr1:56225706-56226003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
247, 37
               

               
Conread position:
               
341-542
               

               
Cow position:
               
chr1:31855315-31855129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
342-614
               

               
Cow position:
               
chr1:97090246-97090511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 11
               

               
Conread position:
               
343-624
               

               
Cow position:
               
chr1:48206613-48206336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
344-649
               

               
Cow position:
               
chr1:98575968-98576269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
345-641
               

               
Cow position:
               
chr1:3942288-3941996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
347-648
               

               
Cow position:
               
chr1:79630989-79630690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
110, 75
               

               
Conread position:
               
349-500
               

               
Cow position:
               
chr1:80904695-80904843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
349-522
               

               
Cow position:
               
chr1:20204954-20205125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
5, 58
               

               
Conread position:
               
351-613
               

               
Cow position:
               
chr1:45223508-45223769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
7, 48
               

               
Conread position:
               
351-621
               

               
Cow position:
               
chr1:33998685-33998950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
8, 75
               

               
Conread position:
               
351-640
               

               
Cow position:
               
chr1:31357581-31357294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
188, 12
               

               
Conread position:
               
352-639
               

               
Cow position:
               
chr1:51417703-51417982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
352-642
               

               
Cow position:
               
chr1:73960635-73960908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
5, 40
               

               
Conread position:
               
352-646
               

               
Cow position:
               
chr1:90904824-90904530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
5, 29
               

               
Conread position:
               
352-647
               

               
Cow position:
               
chr1:72068909-72068606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 253
               

               
Conread position:
               
353-547
               

               
Cow position:
               
chr1:71253621-71253433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
353-558
               

               
Cow position:
               
chr1:95072261-95072466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
353-630
               

               
Cow position:
               
chr1:89509992-89509722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 24
               

               
Conread position:
               
353-643
               

               
Cow position:
               
chr1:98059981-98060283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
55, 62
               

               
Conread position:
               
353-646
               

               
Cow position:
               
chr1:20000820-20000529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
62, 71
               

               
Conread position:
               
354-613
               

               
Cow position:
               
chr1:58754863-58754605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
181, 51
               

               
Conread position:
               
354-625
               

               
Cow position:
               
chr1:54268001-54267733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
206, 28
               

               
Conread position:
               
355-546
               

               
Cow position:
               
chr1:5155284-5155099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
102, 19
               

               
Conread position:
               
355-634
               

               
Cow position:
               
chr1:101860555-101860273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
356-537
               

               
Cow position:
               
chr1:30136420-30136241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
356-542
               

               
Cow position:
               
chr1:48214227-48214040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 52
               

               
Conread position:
               
356-553
               

               
Cow position:
               
chr1:41115780-41115590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
356-557
               

               
Cow position:
               
chr1:24778051-24777860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
356-557
               

               
Cow position:
               
chr1:37886875-37886679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
356-557
               

               
Cow position:
               
chr1:76019761-76019563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
356-557
               

               
Cow position:
               
chr1:77880801-77880602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
356-557
               

               
Cow position:
               
chr1:98551651-98551852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 38
               

               
Conread position:
               
356-590
               

               
Cow position:
               
chr1:68618998-68618762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
105, 43
               

               
Conread position:
               
356-596
               

               
Cow position:
               
chr1:43389116-43388875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 59
               

               
Conread position:
               
356-622
               

               
Cow position:
               
chr1:16767148-16766884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
193, 24
               

               
Conread position:
               
356-623
               

               
Cow position:
               
chr1:33331153-33330899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
183, 37
               

               
Conread position:
               
356-624
               

               
Cow position:
               
chr1:42555198-42555447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
356-625
               

               
Cow position:
               
chr1:70380209-70379961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
356-625
               

               
Cow position:
               
chr1:92590130-92590378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
356-625
               

               
Cow position:
               
chr1:102266335-102266065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
191, 47
               

               
Conread position:
               
356-630
               

               
Cow position:
               
chr1:49825135-49824856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
356-638
               

               
Cow position:
               
chr1:56618716-56618436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 38
               

               
Conread position:
               
356-638
               

               
Cow position:
               
chr1:102753787-102754067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
356-639
               

               
Cow position:
               
chr1:6304928-6304658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
208, 56
               

               
Conread position:
               
356-640
               

               
Cow position:
               
chr1:71665998-71665710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
187, 27
               

               
Conread position:
               
356-642
               

               
Cow position:
               
chr1:96365598-96365869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
214, 28
               

               
Conread position:
               
356-644
               

               
Cow position:
               
chr1:35671476-35671760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
356-645
               

               
Cow position:
               
chr1:59518853-59519134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
44, 111
               

               
Conread position:
               
356-645
               

               
Cow position:
               
chr1:66898562-66898269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
166, 28
               

               
Conread position:
               
356-647
               

               
Cow position:
               
chr1:24406959-24406686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
261, 33
               

               
Conread position:
               
356-649
               

               
Cow position:
               
chr1:97611726-97611442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
156, 47
               

               
Conread position:
               
357-495
               

               
Cow position:
               
chr1:41695535-41695671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
357-499
               

               
Cow position:
               
chr1:42398258-42398116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
357-503
               

               
Cow position:
               
chr1:6788350-6788204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
357-503
               

               
Cow position:
               
chr1:61560791-61560644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
357-506
               

               
Cow position:
               
chr1:57297412-57297564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
357-510
               

               
Cow position:
               
chr1:92433936-92434086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-516
               

               
Cow position:
               
chr1:5023828-5023670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
357-522
               

               
Cow position:
               
chr1:20384685-20384525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
357-522
               

               
Cow position:
               
chr1:43703343-43703507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
357-528
               

               
Cow position:
               
chr1:81563672-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
357-529
               

               
Cow position:
               
chr1:56635031-56635203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
32, 72
               

               
Conread position:
               
357-531
               

               
Cow position:
               
chr1:4414272-4414102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
65, 71
               

               
Conread position:
               
357-531
               

               
Cow position:
               
chr1:81355773-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
357-534
               

               
Cow position:
               
chr1:7350478-7350658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
357-534
               

               
Cow position:
               
chr1:89349898-89350075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
357-535
               

               
Cow position:
               
chr1:6752298-6752120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
78, 46
               

               
Conread position:
               
357-535
               

               
Cow position:
               
chr1:12978616-12978793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-536
               

               
Cow position:
               
chr1:45288936-45288758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
172, 42
               

               
Conread position:
               
357-536
               

               
Cow position:
               
chr1:82884454-82884283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
126, 36
               

               
Conread position:
               
357-537
               

               
Cow position:
               
chr1:38401730-38401912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
357-537
               

               
Cow position:
               
chr1:80900053-80900232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
357-537
               

               
Cow position:
               
chr1:83747876-83748055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
357-537
               

               
Cow position:
               
chr1:91039239-91039061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
357-538
               

               
Cow position:
               
chr1:26702271-26702092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
357-538
               

               
Cow position:
               
chr1:61542982-61542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
357-540
               

               
Cow position:
               
chr1:89497889-89498062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
357-541
               

               
Cow position:
               
chr1:48769739-48769919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
357-542
               

               
Cow position:
               
chr1:52039568-52039754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
357-542
               

               
Cow position:
               
chr1:88652566-88652754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 19
               

               
Conread position:
               
357-543
               

               
Cow position:
               
chr1:13637729-13637544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-543
               

               
Cow position:
               
chr1:99793479-99793668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
357-546
               

               
Cow position:
               
chr1:3965775-3965955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
357-547
               

               
Cow position:
               
chr1:83582999-83582810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
357-547
               

               
Cow position:
               
chr1:91811717-91811902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
172, 43
               

               
Conread position:
               
357-548
               

               
Cow position:
               
chr1:4291096-4291288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 107
               

               
Conread position:
               
357-548
               

               
Cow position:
               
chr1:58036954-58037142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
357-548
               

               
Cow position:
               
chr1:79844402-79844589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
357-548
               

               
Cow position:
               
chr1:81613325-81613513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
357-550
               

               
Cow position:
               
chr1:98594508-98594691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
357-551
               

               
Cow position:
               
chr1:4032564-4032759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
357-551
               

               
Cow position:
               
chr1:78697834-78697645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
357-551
               

               
Cow position:
               
chr1:101632403-101632209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
357-552
               

               
Cow position:
               
chr1:93810365-93810557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
357-553
               

               
Cow position:
               
chr1:52994956-52995155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
357-553
               

               
Cow position:
               
chr1:72356294-72356486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
190, 86
               

               
Conread position:
               
357-553
               

               
Cow position:
               
chr1:96947781-96947590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
178, 28
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr1:7023056-7023251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr1:39069019-39068826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr1:45553308-45553113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr1:67688644-67688453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr1:81913219-81913025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 102
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr1:86073531-86073726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
111, 46
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr1:90976149-90975957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
179, 43
               

               
Conread position:
               
357-556
               

               
Cow position:
               
chr1:98360462-98360272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:5579990-5580188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:34771568-34771370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:41047368-41047169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
59, 71
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:45670572-45670765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:47233543-47233345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:68672664-68672469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:81580105-81580310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:86912374-86912573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:90868505-90868314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:92369668-92369867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:92684756-92684561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr1:95153155-95153355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 86
               

               
Conread position:
               
357-558
               

               
Cow position:
               
chr1:50991870-50992068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
357-558
               

               
Cow position:
               
chr1:91874973-91874783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
357-563
               

               
Cow position:
               
chr1:74822385-74822591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
140, 42
               

               
Conread position:
               
357-565
               

               
Cow position:
               
chr1:43822336-43822540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
357-566
               

               
Cow position:
               
chr1:84255699-84255908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
357-569
               

               
Cow position:
               
chr1:100393231-100393017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 42
               

               
Conread position:
               
357-570
               

               
Cow position:
               
chr1:51044370-51044165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
357-570
               

               
Cow position:
               
chr1:89342059-89341838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 202
               

               
Conread position:
               
357-577
               

               
Cow position:
               
chr1:27380396-27380606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
207, 37
               

               
Conread position:
               
357-582
               

               
Cow position:
               
chr1:62036739-62036963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
183, 11
               

               
Conread position:
               
357-584
               

               
Cow position:
               
chr1:69695056-69694831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
82, 42
               

               
Conread position:
               
357-585
               

               
Cow position:
               
chr1:6972465-6972684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
357-586
               

               
Cow position:
               
chr1:53458632-53458867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 37
               

               
Conread position:
               
357-589
               

               
Cow position:
               
chr1:48730892-48730667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
357-591
               

               
Cow position:
               
chr1:37124061-37124301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
41, 207
               

               
Conread position:
               
357-591
               

               
Cow position:
               
chr1:71079022-71078788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
191, 30
               

               
Conread position:
               
357-591
               

               
Cow position:
               
chr1:96277118-96276879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
134, 43
               

               
Conread position:
               
357-591
               

               
Cow position:
               
chr1:98030850-98031092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
33, 169
               

               
Conread position:
               
357-609
               

               
Cow position:
               
chr1:49433325-49433071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
195, 42
               

               
Conread position:
               
357-611
               

               
Cow position:
               
chr1:17196694-17196434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
357-611
               

               
Cow position:
               
chr1:95499558-95499305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
186, 41
               

               
Conread position:
               
357-612
               

               
Cow position:
               
chr1:65028467-65028717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 171
               

               
Conread position:
               
357-613
               

               
Cow position:
               
chr1:6941399-6941659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
357-619
               

               
Cow position:
               
chr1:72813550-72813817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
190, 71
               

               
Conread position:
               
357-621
               

               
Cow position:
               
chr1:39224991-39224738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
357-621
               

               
Cow position:
               
chr1:39427066-39426816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
357-621
               

               
Cow position:
               
chr1:52052785-52052532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 193
               

               
Conread position:
               
357-621
               

               
Cow position:
               
chr1:52467237-52467486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
357-621
               

               
Cow position:
               
chr1:57575823-57575563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
181, 25
               

               
Conread position:
               
357-621
               

               
Cow position:
               
chr1:89448833-89449099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
357-622
               

               
Cow position:
               
chr1:27463066-27463330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
357-622
               

               
Cow position:
               
chr1:70828835-70829098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 144
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:484530-484258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
180, 41
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:21577745-21578015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:24542646-24542365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:25383599-25383874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:26934331-26934063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
176, 36
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:30189082-30189362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:41181781-41182041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
184, 27
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:54258498-54258774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
22, 139
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:54478260-54478521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
48, 189
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:61564732-61564986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
143, 67
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:64302312-64302045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
37, 185
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:68763747-68763479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
179, 34
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:71295370-71295099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:72011873-72011617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:76613199-76612927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
182, 13
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:79165149-79164877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:82513420-82513147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
65, 71
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:83072373-83072645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
39, 244
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:84812007-84811736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr1:85028888-85029141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
357-628
               

               
Cow position:
               
chr1:51394351-51394626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
357-628
               

               
Cow position:
               
chr1:79640355-79640081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
203, 238
               

               
Conread position:
               
357-629
               

               
Cow position:
               
chr1:65318512-65318787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
195, 21
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr1:10942162-10941887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
30, 148
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr1:10964224-10964499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 148
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr1:20104204-20104476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
181, 43
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr1:54206883-54206609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr1:90621572-90621297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
357-631
               

               
Cow position:
               
chr1:3923859-3923593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
199, 21
               

               
Conread position:
               
357-631
               

               
Cow position:
               
chr1:15333820-15334100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
357-631
               

               
Cow position:
               
chr1:91023532-91023258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 34
               

               
Conread position:
               
357-632
               

               
Cow position:
               
chr1:82337845-82337568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
357-634
               

               
Cow position:
               
chr1:186341-186066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
48, 43
               

               
Conread position:
               
357-634
               

               
Cow position:
               
chr1:22728987-22729269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
41, 243
               

               
Conread position:
               
357-634
               

               
Cow position:
               
chr1:68817863-68817586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 46
               

               
Conread position:
               
357-634
               

               
Cow position:
               
chr1:91066217-91065943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
213, 53
               

               
Conread position:
               
357-635
               

               
Cow position:
               
chr1:1956398-1956123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
202, 41
               

               
Conread position:
               
357-635
               

               
Cow position:
               
chr1:69539633-69539901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
185, 34
               

               
Conread position:
               
357-635
               

               
Cow position:
               
chr1:102784894-102785161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
66, 15
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr1:12464730-12464449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 46
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr1:21787266-21787540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
46, 69
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr1:34159773-34160044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
132, 21
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr1:43505460-43505740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 239
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr1:64572449-64572730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 35
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr1:68845549-68845284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
213, 21
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr1:68862968-68863235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
357-638
               

               
Cow position:
               
chr1:8552-8837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
203, 34
               

               
Conread position:
               
357-638
               

               
Cow position:
               
chr1:261549-261247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
357-638
               

               
Cow position:
               
chr1:25281725-25281461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
357-638
               

               
Cow position:
               
chr1:45555300-45555583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
211, 42
               

               
Conread position:
               
357-638
               

               
Cow position:
               
chr1:64678631-64678898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
357-639
               

               
Cow position:
               
chr1:1877965-1878243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
190, 42
               

               
Conread position:
               
357-639
               

               
Cow position:
               
chr1:20667806-20667531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
213, 43
               

               
Conread position:
               
357-639
               

               
Cow position:
               
chr1:42541533-42541810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
190, 34
               

               
Conread position:
               
357-639
               

               
Cow position:
               
chr1:61884849-61885130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 8
               

               
Conread position:
               
357-639
               

               
Cow position:
               
chr1:74084259-74083969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 106
               

               
Conread position:
               
357-639
               

               
Cow position:
               
chr1:78096860-78097146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
56, 72
               

               
Conread position:
               
357-640
               

               
Cow position:
               
chr1:197072-196786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 68
               

               
Conread position:
               
357-640
               

               
Cow position:
               
chr1:22525811-22526094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
50, 43
               

               
Conread position:
               
357-640
               

               
Cow position:
               
chr1:47790730-47790447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
357-640
               

               
Cow position:
               
chr1:82936656-82936386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
357-640
               

               
Cow position:
               
chr1:88913254-88913540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 35
               

               
Conread position:
               
357-641
               

               
Cow position:
               
chr1:42482139-42482422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
357-642
               

               
Cow position:
               
chr1:24133123-24132841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 19
               

               
Conread position:
               
357-642
               

               
Cow position:
               
chr1:48444258-48443969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
167, 44
               

               
Conread position:
               
357-642
               

               
Cow position:
               
chr1:52435208-52435498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
190, 29
               

               
Conread position:
               
357-642
               

               
Cow position:
               
chr1:53622896-53623175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
161, 10
               

               
Conread position:
               
357-642
               

               
Cow position:
               
chr1:78857386-78857105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
202, 28
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr1:22823839-22824134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr1:24534318-24534034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
193, 43
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr1:44506904-44507192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 202
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr1:46030895-46031185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
176, 29
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr1:61005620-61005335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
193, 22
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr1:86682626-86682344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
42, 49
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr1:93499560-93499842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr1:95176871-95177140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr1:98583693-98583972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr1:102306207-102305924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
194, 87
               

               
Conread position:
               
357-644
               

               
Cow position:
               
chr1:41696994-41697278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
357-645
               

               
Cow position:
               
chr1:30983555-30983268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
357-646
               

               
Cow position:
               
chr1:54156796-54156508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
357-646
               

               
Cow position:
               
chr1:96081416-96081702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
190, 40
               

               
Conread position:
               
357-648
               

               
Cow position:
               
chr1:1981179-1980880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
167, 43
               

               
Conread position:
               
357-648
               

               
Cow position:
               
chr1:31272505-31272218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
212, 21
               

               
Conread position:
               
357-648
               

               
Cow position:
               
chr1:63434870-63434570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
179, 37
               

               
Conread position:
               
357-648
               

               
Cow position:
               
chr1:71119452-71119749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
37, 70
               

               
Conread position:
               
357-648
               

               
Cow position:
               
chr1:86110795-86110517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
184, 32
               

               
Conread position:
               
357-649
               

               
Cow position:
               
chr1:35162345-35162633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
357-649
               

               
Cow position:
               
chr1:73545972-73545675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
164, 37
               

               
Conread position:
               
357-652
               

               
Cow position:
               
chr1:31934448-31934734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
110, 36
               

               
Conread position:
               
357-655
               

               
Cow position:
               
chr1:97231894-97232205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
357-657
               

               
Cow position:
               
chr1:8129035-8128741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
357-659
               

               
Cow position:
               
chr1:40599979-40600264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
357-666
               

               
Cow position:
               
chr1:100551905-100552213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 17
               

               
Conread position:
               
358-536
               

               
Cow position:
               
chr1:23998990-23998823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
171, 29
               

               
Conread position:
               
358-542
               

               
Cow position:
               
chr1:68253528-68253713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
102, 27
               

               
Conread position:
               
358-551
               

               
Cow position:
               
chr1:67646165-67646367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
358-556
               

               
Cow position:
               
chr1:3790129-3789938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
358-557
               

               
Cow position:
               
chr1:86340537-86340335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
358-557
               

               
Cow position:
               
chr1:98511865-98512059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
358-614
               

               
Cow position:
               
chr1:100762012-100762268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
358-628
               

               
Cow position:
               
chr1:55705313-55705039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
358-630
               

               
Cow position:
               
chr1:78066602-78066333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
358-630
               

               
Cow position:
               
chr1:81569094-81568820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
358-631
               

               
Cow position:
               
chr1:49317559-49317289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
212, 43
               

               
Conread position:
               
358-633
               

               
Cow position:
               
chr1:97954528-97954271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
358-636
               

               
Cow position:
               
chr1:724674-724955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
358-639
               

               
Cow position:
               
chr1:46143526-46143249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 36
               

               
Conread position:
               
358-641
               

               
Cow position:
               
chr1:89388274-89388563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 244
               

               
Conread position:
               
358-642
               

               
Cow position:
               
chr1:43855238-43855511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
358-643
               

               
Cow position:
               
chr1:82880581-82880852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
358-648
               

               
Cow position:
               
chr1:72304440-72304175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
203, 33
               

               
Conread position:
               
358-648
               

               
Cow position:
               
chr1:75744797-75745088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
178, 29
               

               
Conread position:
               
358-659
               

               
Cow position:
               
chr1:97755453-97755741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 128
               

               
Conread position:
               
359-508
               

               
Cow position:
               
chr1:89485514-89485664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
359-548
               

               
Cow position:
               
chr1:30418100-30417924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
359-551
               

               
Cow position:
               
chr1:85550140-85549952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
359-554
               

               
Cow position:
               
chr1:93043957-93044147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
359-557
               

               
Cow position:
               
chr1:85162612-85162412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
359-565
               

               
Cow position:
               
chr1:43312091-43311889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
197, 17
               

               
Conread position:
               
359-565
               

               
Cow position:
               
chr1:100800294-100800489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
359-588
               

               
Cow position:
               
chr1:24581520-24581740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 6
               

               
Conread position:
               
359-614
               

               
Cow position:
               
chr1:99642428-99642174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
188, 41
               

               
Conread position:
               
359-624
               

               
Cow position:
               
chr1:100852656-100852906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
359-625
               

               
Cow position:
               
chr1:56225404-56225671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 241
               

               
Conread position:
               
359-625
               

               
Cow position:
               
chr1:74956083-74955827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
359-625
               

               
Cow position:
               
chr1:81290441-81290709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 116
               

               
Conread position:
               
359-632
               

               
Cow position:
               
chr1:55429021-55428740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
359-636
               

               
Cow position:
               
chr1:89158192-89157902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
359-639
               

               
Cow position:
               
chr1:61742032-61741745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 47
               

               
Conread position:
               
359-643
               

               
Cow position:
               
chr1:70538545-70538829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 236
               

               
Conread position:
               
359-649
               

               
Cow position:
               
chr1:78838734-78839017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
195, 43
               

               
Conread position:
               
360-542
               

               
Cow position:
               
chr1:3167136-3166957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
178, 31
               

               
Conread position:
               
360-542
               

               
Cow position:
               
chr1:6826356-6826181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
360-546
               

               
Cow position:
               
chr1:4581394-4581208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
360-625
               

               
Cow position:
               
chr1:41056615-41056885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 39
               

               
Conread position:
               
360-625
               

               
Cow position:
               
chr1:87197754-87198033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
360-626
               

               
Cow position:
               
chr1:100474170-100474445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
163, 171
               

               
Conread position:
               
360-630
               

               
Cow position:
               
chr1:5597271-5597003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
360-633
               

               
Cow position:
               
chr1:70434936-70435199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
205, 39
               

               
Conread position:
               
360-635
               

               
Cow position:
               
chr1:48618301-48618032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
182, 60
               

               
Conread position:
               
360-641
               

               
Cow position:
               
chr1:80584369-80584648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 40
               

               
Conread position:
               
360-641
               

               
Cow position:
               
chr1:101507296-101507570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
360-644
               

               
Cow position:
               
chr1:61012248-61012532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
34, 164
               

               
Conread position:
               
360-646
               

               
Cow position:
               
chr1:29935448-29935163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
199, 73
               

               
Conread position:
               
360-648
               

               
Cow position:
               
chr1:28563634-28563335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 116
               

               
Conread position:
               
360-652
               

               
Cow position:
               
chr1:23186862-23186567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 27
               

               
Conread position:
               
360-657
               

               
Cow position:
               
chr1:18936896-18936598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
166, 43
               

               
Conread position:
               
361-516
               

               
Cow position:
               
chr1:32044029-32043875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 56
               

               
Conread position:
               
361-547
               

               
Cow position:
               
chr1:79003913-79004094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
361-551
               

               
Cow position:
               
chr1:76658140-76657940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
68, 64
               

               
Conread position:
               
361-567
               

               
Cow position:
               
chr1:41252467-41252268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 39
               

               
Conread position:
               
361-630
               

               
Cow position:
               
chr1:37322062-37321800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
361-631
               

               
Cow position:
               
chr1:3323805-3324084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
124, 159
               

               
Conread position:
               
361-634
               

               
Cow position:
               
chr1:62235508-62235242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
136, 38
               

               
Conread position:
               
361-648
               

               
Cow position:
               
chr1:64804164-64803867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
171, 11
               

               
Conread position:
               
362-551
               

               
Cow position:
               
chr1:60901014-60901200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
362-565
               

               
Cow position:
               
chr1:79146881-79146677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
362-570
               

               
Cow position:
               
chr1:80841593-80841790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
362-612
               

               
Cow position:
               
chr1:89381215-89381466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
195, 30
               

               
Conread position:
               
362-613
               

               
Cow position:
               
chr1:64113854-64113607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
32, 184
               

               
Conread position:
               
362-626
               

               
Cow position:
               
chr1:97303304-97303047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
151, 25
               

               
Conread position:
               
362-630
               

               
Cow position:
               
chr1:21955431-21955162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
182, 37
               

               
Conread position:
               
362-635
               

               
Cow position:
               
chr1:48105493-48105208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
362-643
               

               
Cow position:
               
chr1:627902-628189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 63
               

               
Conread position:
               
362-646
               

               
Cow position:
               
chr1:37695969-37695677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
33, 41
               

               
Conread position:
               
362-648
               

               
Cow position:
               
chr1:81477931-81477635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
162, 240
               

               
Conread position:
               
363-535
               

               
Cow position:
               
chr1:81868786-81868619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
363-538
               

               
Cow position:
               
chr1:96583659-96583478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
363-540
               

               
Cow position:
               
chr1:30504443-30504617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
363-546
               

               
Cow position:
               
chr1:39510113-39509936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
363-547
               

               
Cow position:
               
chr1:18780396-18780206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
363-548
               

               
Cow position:
               
chr1:69264752-69264932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
363-551
               

               
Cow position:
               
chr1:99221413-99221229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
363-553
               

               
Cow position:
               
chr1:85647840-85647651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
173, 31
               

               
Conread position:
               
363-558
               

               
Cow position:
               
chr1:46764815-46765013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
363-620
               

               
Cow position:
               
chr1:68855104-68855366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
174, 237
               

               
Conread position:
               
363-625
               

               
Cow position:
               
chr1:100450239-100449987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
363-630
               

               
Cow position:
               
chr1:78810979-78811248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 40
               

               
Conread position:
               
363-633
               

               
Cow position:
               
chr1:50931035-50930766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
184, 37
               

               
Conread position:
               
363-634
               

               
Cow position:
               
chr1:101714055-101714330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
363-635
               

               
Cow position:
               
chr1:42874013-42873763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 159
               

               
Conread position:
               
363-636
               

               
Cow position:
               
chr1:69551544-69551265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
363-636
               

               
Cow position:
               
chr1:101834763-101835033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
174, 36
               

               
Conread position:
               
363-639
               

               
Cow position:
               
chr1:45019866-45019584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
363-644
               

               
Cow position:
               
chr1:19482138-19481875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
267, 16
               

               
Conread position:
               
363-647
               

               
Cow position:
               
chr1:42175666-42175956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
364-501
               

               
Cow position:
               
chr1:87440407-87440544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
30, 128
               

               
Conread position:
               
364-557
               

               
Cow position:
               
chr1:8347066-8347256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
364-557
               

               
Cow position:
               
chr1:53308451-53308261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
44, 118
               

               
Conread position:
               
364-635
               

               
Cow position:
               
chr1:43311835-43311557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 227
               

               
Conread position:
               
365-548
               

               
Cow position:
               
chr1:84768936-84768755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
365-551
               

               
Cow position:
               
chr1:5135760-5135582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
171, 26
               

               
Conread position:
               
365-625
               

               
Cow position:
               
chr1:52912954-52912687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
365-625
               

               
Cow position:
               
chr1:101634646-101634904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
26, 70
               

               
Conread position:
               
365-640
               

               
Cow position:
               
chr1:52662231-52661956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
210, 70
               

               
Conread position:
               
365-645
               

               
Cow position:
               
chr1:10716439-10716730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
366-633
               

               
Cow position:
               
chr1:92197397-92197667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
56, 62
               

               
Conread position:
               
366-641
               

               
Cow position:
               
chr1:15547416-15547686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
206, 34
               

               
Conread position:
               
367-528
               

               
Cow position:
               
chr1:89230286-89230127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
367-625
               

               
Cow position:
               
chr1:56477533-56477790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
367-630
               

               
Cow position:
               
chr1:70175596-70175332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
367-635
               

               
Cow position:
               
chr1:6854358-6854104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
367-640
               

               
Cow position:
               
chr1:81481439-81481166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
367-641
               

               
Cow position:
               
chr1:72105357-72105623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
192, 31
               

               
Conread position:
               
367-646
               

               
Cow position:
               
chr1:72034978-72034700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
177, 33
               

               
Conread position:
               
368-522
               

               
Cow position:
               
chr1:91800656-91800500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 108
               

               
Conread position:
               
368-642
               

               
Cow position:
               
chr1:22827101-22827374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
106, 172
               

               
Conread position:
               
369-554
               

               
Cow position:
               
chr1:49153263-49153446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
369-643
               

               
Cow position:
               
chr1:43286291-43286551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
201, 151
               

               
Conread position:
               
372-555
               

               
Cow position:
               
chr1:95974345-95974532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
372-557
               

               
Cow position:
               
chr1:816461-816281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
372-640
               

               
Cow position:
               
chr1:500123-500396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
375-622
               

               
Cow position:
               
chr1:97833663-97833899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
195, 61
               

               
Conread position:
               
376-636
               

               
Cow position:
               
chr1:102529902-102529638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
163, 22
               

               
Conread position:
               
378-548
               

               
Cow position:
               
chr1:69481994-69481826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
379-632
               

               
Cow position:
               
chr1:89158743-89158496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
380-537
               

               
Cow position:
               
chr1:57090934-57091091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
381-638
               

               
Cow position:
               
chr1:85771968-85772224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
144, 13
               

               
Conread position:
               
381-654
               

               
Cow position:
               
chr1:62997756-62998025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
383-638
               

               
Cow position:
               
chr1:6760076-6759826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
385-529
               

               
Cow position:
               
chr1:60466187-60466334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
385-558
               

               
Cow position:
               
chr1:8670736-8670908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
156, 6
               

               
Conread position:
               
385-625
               

               
Cow position:
               
chr1:7908000-7908230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
385-630
               

               
Cow position:
               
chr1:82537898-82538137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
385-640
               

               
Cow position:
               
chr1:73020700-73020440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
175, 21
               

               
Conread position:
               
385-648
               

               
Cow position:
               
chr1:67919096-67919359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
185, 139
               

               
Conread position:
               
388-557
               

               
Cow position:
               
chr1:3882495-3882326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 41
               

               
Conread position:
               
388-624
               

               
Cow position:
               
chr1:62964229-62964472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
23, 214
               

               
Conread position:
               
388-630
               

               
Cow position:
               
chr1:67654356-67654116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
152, 208
               

               
Conread position:
               
389-624
               

               
Cow position:
               
chr1:81858939-81858697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 213
               

               
Conread position:
               
389-653
               

               
Cow position:
               
chr1:72422442-72422172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
158, 14
               

               
Conread position:
               
391-634
               

               
Cow position:
               
chr1:76037549-76037298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
145, 139
               

               
Conread position:
               
391-648
               

               
Cow position:
               
chr1:48581096-48581345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
149, 133
               

               
Conread position:
               
392-542
               

               
Cow position:
               
chr1:83618641-83618486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
392-613
               

               
Cow position:
               
chr1:11729146-11729365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
167, 10
               

               
Conread position:
               
392-621
               

               
Cow position:
               
chr1:49980678-49980909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
168, 87
               

               
Conread position:
               
392-625
               

               
Cow position:
               
chr1:7971380-7971609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
392-625
               

               
Cow position:
               
chr1:22192737-22192975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
158, 208
               

               
Conread position:
               
392-625
               

               
Cow position:
               
chr1:88359845-88360090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 217
               

               
Conread position:
               
392-632
               

               
Cow position:
               
chr1:10633011-10633252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
8, 203
               

               
Conread position:
               
392-641
               

               
Cow position:
               
chr1:40192729-40192484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
392-644
               

               
Cow position:
               
chr1:10778529-10778776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
11, 170
               

               
Conread position:
               
392-647
               

               
Cow position:
               
chr1:98911977-98912234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
146, 11
               

               
Conread position:
               
392-660
               

               
Cow position:
               
chr1:102768148-102768415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
13, 68
               

               
Conread position:
               
394-531
               

               
Cow position:
               
chr1:82556438-82556305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
394-540
               

               
Cow position:
               
chr1:5006132-5006277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
394-613
               

               
Cow position:
               
chr1:62034858-62034642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
177, 96
               

               
Conread position:
               
394-623
               

               
Cow position:
               
chr1:57089709-57089476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
153, 114
               

               
Conread position:
               
394-632
               

               
Cow position:
               
chr1:19466024-19466248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
394-641
               

               
Cow position:
               
chr1:83092845-83093083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
153, 66
               

               
Conread position:
               
395-621
               

               
Cow position:
               
chr1:2462355-2462572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
152, 11
               

               
Conread position:
               
395-621
               

               
Cow position:
               
chr1:41027046-41027273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
142, 67
               

               
Conread position:
               
395-623
               

               
Cow position:
               
chr1:19515649-19515414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 207
               

               
Conread position:
               
395-625
               

               
Cow position:
               
chr1:8287659-8287425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
161, 119
               

               
Conread position:
               
396-562
               

               
Cow position:
               
chr1:54157267-54157436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 5
               

               
Conread position:
               
396-621
               

               
Cow position:
               
chr1:73721332-73721565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
122, 136
               

               
Conread position:
               
396-632
               

               
Cow position:
               
chr1:852143-852386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
153, 10
               

               
Conread position:
               
396-642
               

               
Cow position:
               
chr1:67529027-67529278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
151, 204
               

               
Conread position:
               
397-625
               

               
Cow position:
               
chr1:15102862-15103089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
162, 42
               

               
Conread position:
               
398-531
               

               
Cow position:
               
chr1:19227083-19226950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
398-537
               

               
Cow position:
               
chr1:40935793-40935653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 27
               

               
Conread position:
               
398-625
               

               
Cow position:
               
chr1:55753241-55753014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
149, 44
               

               
Conread position:
               
399-621
               

               
Cow position:
               
chr1:63078985-63079202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
171, 75
               

               
Conread position:
               
400-551
               

               
Cow position:
               
chr1:45478882-45478736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
400-625
               

               
Cow position:
               
chr1:97144487-97144266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
400-632
               

               
Cow position:
               
chr1:78794255-78794024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
170, 194
               

               
Conread position:
               
400-635
               

               
Cow position:
               
chr1:83025188-83024950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
116, 198
               

               
Conread position:
               
400-648
               

               
Cow position:
               
chr1:36998161-36998410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
400-654
               

               
Cow position:
               
chr1:51445864-51446115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
401-558
               

               
Cow position:
               
chr1:19962028-19962184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
5, 61
               

               
Conread position:
               
401-628
               

               
Cow position:
               
chr1:68127213-68126982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
402-527
               

               
Cow position:
               
chr1:87211911-87212036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
402-557
               

               
Cow position:
               
chr1:808843-808689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
98, 140
               

               
Conread position:
               
402-615
               

               
Cow position:
               
chr1:61011159-61011370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
168, 161
               

               
Conread position:
               
402-621
               

               
Cow position:
               
chr1:95618619-95618842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
8, 197
               

               
Conread position:
               
402-643
               

               
Cow position:
               
chr1:88338645-88338875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
225, 112
               

               
Conread position:
               
402-647
               

               
Cow position:
               
chr1:93590608-93590361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
169, 202
               

               
Conread position:
               
403-535
               

               
Cow position:
               
chr1:54732506-54732376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
403-538
               

               
Cow position:
               
chr1:33775664-33775532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
56, 95
               

               
Conread position:
               
403-551
               

               
Cow position:
               
chr1:71916140-71915993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
403-557
               

               
Cow position:
               
chr1:3914939-3914786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
403-591
               

               
Cow position:
               
chr1:53397954-53398147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
403-621
               

               
Cow position:
               
chr1:53520890-53521106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
403-631
               

               
Cow position:
               
chr1:45575913-45576130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
138, 17
               

               
Conread position:
               
403-631
               

               
Cow position:
               
chr1:66752650-66752421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
153, 193
               

               
Conread position:
               
403-632
               

               
Cow position:
               
chr1:27959571-27959335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
136, 67
               

               
Conread position:
               
403-638
               

               
Cow position:
               
chr1:63530537-63530773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
136, 197
               

               
Conread position:
               
403-638
               

               
Cow position:
               
chr1:87095235-87094994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 24
               

               
Conread position:
               
403-641
               

               
Cow position:
               
chr1:42887298-42887060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 193
               

               
Conread position:
               
403-643
               

               
Cow position:
               
chr1:84104082-84103834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
145, 199
               

               
Conread position:
               
403-648
               

               
Cow position:
               
chr1:38706875-38706625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
403-649
               

               
Cow position:
               
chr1:21560991-21561249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
135, 204
               

               
Conread position:
               
403-652
               

               
Cow position:
               
chr1:100823016-100823272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
403-655
               

               
Cow position:
               
chr1:7748192-7748451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 22
               

               
Conread position:
               
403-655
               

               
Cow position:
               
chr1:7752358-7752615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 22
               

               
Conread position:
               
404-542
               

               
Cow position:
               
chr1:44125656-44125520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 66
               

               
Conread position:
               
404-550
               

               
Cow position:
               
chr1:42537343-42537196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
71, 109
               

               
Conread position:
               
404-557
               

               
Cow position:
               
chr1:9143702-9143851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
404-557
               

               
Cow position:
               
chr1:95676309-95676157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
143, 24
               

               
Conread position:
               
404-635
               

               
Cow position:
               
chr1:6731161-6731394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
156, 24
               

               
Conread position:
               
404-636
               

               
Cow position:
               
chr1:24530482-24530714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
159, 27
               

               
Conread position:
               
404-641
               

               
Cow position:
               
chr1:20871579-20871334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
143, 195
               

               
Conread position:
               
404-643
               

               
Cow position:
               
chr1:16061024-16060785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
143, 157
               

               
Conread position:
               
404-651
               

               
Cow position:
               
chr1:77739702-77739955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
137, 113
               

               
Conread position:
               
405-522
               

               
Cow position:
               
chr1:80442724-80442841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
405-528
               

               
Cow position:
               
chr1:62291717-62291597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
405-539
               

               
Cow position:
               
chr1:37309538-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
405-539
               

               
Cow position:
               
chr1:95215209-95215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
405-620
               

               
Cow position:
               
chr1:96472420-96472615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
405-647
               

               
Cow position:
               
chr1:55229957-55230200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
155, 191
               

               
Conread position:
               
406-547
               

               
Cow position:
               
chr1:74081999-74081859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
406-647
               

               
Cow position:
               
chr1:53452519-53452747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
164, 91
               

               
Conread position:
               
407-625
               

               
Cow position:
               
chr1:14206166-14205959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
407-630
               

               
Cow position:
               
chr1:102648261-102648490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 18
               

               
Conread position:
               
407-632
               

               
Cow position:
               
chr1:26895828-26895599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
153, 191
               

               
Conread position:
               
408-625
               

               
Cow position:
               
chr1:242541-242757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
162, 172
               

               
Conread position:
               
408-625
               

               
Cow position:
               
chr1:45315652-45315426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
140, 196
               

               
Conread position:
               
409-532
               

               
Cow position:
               
chr1:31598910-31599033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
410-621
               

               
Cow position:
               
chr1:759432-759211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
149, 192
               

               
Conread position:
               
411-591
               

               
Cow position:
               
chr1:101789103-101788923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
412-522
               

               
Cow position:
               
chr1:83067059-83066949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
413-554
               

               
Cow position:
               
chr1:45874089-45873940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
414-537
               

               
Cow position:
               
chr1:52429670-52429547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
414-635
               

               
Cow position:
               
chr1:8788281-8788505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
105, 184
               

               
Conread position:
               
414-641
               

               
Cow position:
               
chr1:68688573-68688797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
145, 181
               

               
Conread position:
               
415-619
               

               
Cow position:
               
chr1:83606459-83606257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
18, 6
               

               
Conread position:
               
416-556
               

               
Cow position:
               
chr1:68845177-68845038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
131, 122
               

               
Conread position:
               
417-545
               

               
Cow position:
               
chr1:97750626-97750498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
419-648
               

               
Cow position:
               
chr1:40212337-40212118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
128, 57
               

               
Conread position:
               
421-552
               

               
Cow position:
               
chr1:32857029-32857166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
424-644
               

               
Cow position:
               
chr1:69185723-69185505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
425-547
               

               
Cow position:
               
chr1:44269092-44269211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
425-625
               

               
Cow position:
               
chr1:7965854-7966052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
118, 37
               

               
Conread position:
               
425-625
               

               
Cow position:
               
chr1:32035708-32035509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
425-636
               

               
Cow position:
               
chr1:43499295-43499094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
427-625
               

               
Cow position:
               
chr1:99605184-99604987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
111, 171
               

               
Conread position:
               
427-636
               

               
Cow position:
               
chr1:95156961-95156749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
120, 171
               

               
Conread position:
               
427-648
               

               
Cow position:
               
chr1:41138141-41137912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
111, 168
               

               
Conread position:
               
428-551
               

               
Cow position:
               
chr1:53640719-53640839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
428-554
               

               
Cow position:
               
chr1:83783926-83783799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
428-634
               

               
Cow position:
               
chr1:30948996-30949196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
142, 66
               

               
Conread position:
               
428-636
               

               
Cow position:
               
chr1:100573623-100573412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
132, 170
               

               
Conread position:
               
428-643
               

               
Cow position:
               
chr1:95152875-95153098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
114, 174
               

               
Conread position:
               
430-639
               

               
Cow position:
               
chr1:4329894-4329690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
140, 39
               

               
Conread position:
               
430-647
               

               
Cow position:
               
chr1:71946078-71945854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
124, 168
               

               
Conread position:
               
430-648
               

               
Cow position:
               
chr1:70483328-70483108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
108, 170
               

               
Conread position:
               
432-639
               

               
Cow position:
               
chr1:55685970-55685755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 167
               

               
Conread position:
               
432-642
               

               
Cow position:
               
chr1:63994547-63994331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
110, 167
               

               
Conread position:
               
432-648
               

               
Cow position:
               
chr1:11709010-11708796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
135, 161
               

               
Conread position:
               
432-648
               

               
Cow position:
               
chr1:23055055-23055272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
433-556
               

               
Cow position:
               
chr1:55194237-55194115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
433-625
               

               
Cow position:
               
chr1:524817-525011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
103, 164
               

               
Conread position:
               
433-636
               

               
Cow position:
               
chr1:100538549-100538742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
137, 36
               

               
Conread position:
               
433-643
               

               
Cow position:
               
chr1:12595567-12595363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 99
               

               
Conread position:
               
434-627
               

               
Cow position:
               
chr1:71636315-71636121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
434-635
               

               
Cow position:
               
chr1:50585868-50585661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 167
               

               
Conread position:
               
435-547
               

               
Cow position:
               
chr1:84288414-84288526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
435-619
               

               
Cow position:
               
chr1:96558838-96558647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
104, 167
               

               
Conread position:
               
435-637
               

               
Cow position:
               
chr1:63460889-63461095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 164
               

               
Conread position:
               
435-639
               

               
Cow position:
               
chr1:25022064-25021859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
121, 161
               

               
Conread position:
               
436-661
               

               
Cow position:
               
chr1:87934259-87934039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
437-625
               

               
Cow position:
               
chr1:42774924-42775111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
141, 7
               

               
Conread position:
               
437-648
               

               
Cow position:
               
chr1:85339400-85339606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
134, 35
               

               
Conread position:
               
438-640
               

               
Cow position:
               
chr1:29671210-29671000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
118, 167
               

               
Conread position:
               
438-643
               

               
Cow position:
               
chr1:23969043-23968841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
438-647
               

               
Cow position:
               
chr1:70416746-70416531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
102, 161
               

               
Conread position:
               
439-625
               

               
Cow position:
               
chr1:89835732-89835915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
130, 101
               

               
Conread position:
               
439-630
               

               
Cow position:
               
chr1:102730747-102730546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
102, 165
               

               
Conread position:
               
439-640
               

               
Cow position:
               
chr1:77810743-77810543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
439-643
               

               
Cow position:
               
chr1:23101691-23101898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
439-648
               

               
Cow position:
               
chr1:69378584-69378369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
105, 85
               

               
Conread position:
               
441-628
               

               
Cow position:
               
chr1:81638565-81638747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
129, 112
               

               
Conread position:
               
441-629
               

               
Cow position:
               
chr1:76474540-76474350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
106, 82
               

               
Conread position:
               
441-631
               

               
Cow position:
               
chr1:84594905-84595102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 161
               

               
Conread position:
               
441-635
               

               
Cow position:
               
chr1:56913512-56913317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
95, 85
               

               
Conread position:
               
441-645
               

               
Cow position:
               
chr1:89298093-89297882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 58
               

               
Conread position:
               
441-645
               

               
Cow position:
               
chr1:89301702-89301491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 58
               

               
Conread position:
               
443-557
               

               
Cow position:
               
chr1:3417374-3417488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
443-643
               

               
Cow position:
               
chr1:1380016-1380226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 160
               

               
Conread position:
               
443-643
               

               
Cow position:
               
chr1:62469080-62469283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
443-646
               

               
Cow position:
               
chr1:31256207-31256006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
127, 152
               

               
Conread position:
               
444-639
               

               
Cow position:
               
chr1:53651007-53651196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
116, 47
               

               
Conread position:
               
445-564
               

               
Cow position:
               
chr1:3061534-3061419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
445-624
               

               
Cow position:
               
chr1:19384437-19384253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
14, 155
               

               
Conread position:
               
446-643
               

               
Cow position:
               
chr1:91743437-91743242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
446-647
               

               
Cow position:
               
chr1:20537227-20537431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
110, 150
               

               
Conread position:
               
446-648
               

               
Cow position:
               
chr1:5284206-5283998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
447-551
               

               
Cow position:
               
chr1:73494573-73494469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
447-591
               

               
Cow position:
               
chr1:30406101-30406246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 118
               

               
Conread position:
               
447-631
               

               
Cow position:
               
chr1:100800746-100800557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
30, 152
               

               
Conread position:
               
448-649
               

               
Cow position:
               
chr1:3679494-3679298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
112, 22
               

               
Conread position:
               
450-625
               

               
Cow position:
               
chr1:98742048-98742221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
110, 31
               

               
Conread position:
               
451-647
               

               
Cow position:
               
chr1:75227295-75227099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 111
               

               
Conread position:
               
457-591
               

               
Cow position:
               
chr1:46354406-46354266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
459-640
               

               
Cow position:
               
chr1:84787305-84787480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
111, 85
               

               
Conread position:
               
460-630
               

               
Cow position:
               
chr1:53474191-53474358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
461-628
               

               
Cow position:
               
chr1:10470463-10470630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 104
               

               
Conread position:
               
461-631
               

               
Cow position:
               
chr1:30028195-30028021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 138
               

               
Conread position:
               
462-621
               

               
Cow position:
               
chr1:92363625-92363469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
100, 49
               

               
Conread position:
               
462-641
               

               
Cow position:
               
chr1:79170115-79169932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
85, 141
               

               
Conread position:
               
462-647
               

               
Cow position:
               
chr1:53456849-53457039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
97, 24
               

               
Conread position:
               
463-646
               

               
Cow position:
               
chr1:51968576-51968753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 108
               

               
Conread position:
               
471-643
               

               
Cow position:
               
chr1:37470548-37470714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
473-629
               

               
Cow position:
               
chr1:3034150-3033999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 52
               

               
Conread position:
               
473-648
               

               
Cow position:
               
chr1:81615703-81615880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
76, 126
               

               
Conread position:
               
477-625
               

               
Cow position:
               
chr1:80423679-80423527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 122
               

               
Conread position:
               
479-647
               

               
Cow position:
               
chr1:50906625-50906452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 119
               

               
Conread position:
               
481-649
               

               
Cow position:
               
chr1:39095545-39095714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
57, 118
               

               
Conread position:
               
492-648
               

               
Cow position:
               
chr1:45233059-45233211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 38
               
Show alignments to all cow chromosomes.