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Cow genome map

           
Conread name:
           
Ss1.1-Pig2-55M18.5
        

               
Conread position:
               
316-624
               

               
Cow position:
               
chr5:69099635-69099944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
331-634
               

               
Cow position:
               
chr5:55068630-55068935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
332-542
               

               
Cow position:
               
chr5:7723592-7723803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
332-548
               

               
Cow position:
               
chr5:38076560-38076339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
332-632
               

               
Cow position:
               
chr5:43923227-43922937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
339-537
               

               
Cow position:
               
chr5:56211837-56212039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
18, 131
               

               
Conread position:
               
342-557
               

               
Cow position:
               
chr5:23168891-23168673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
342-590
               

               
Cow position:
               
chr5:28302809-28302557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
349-563
               

               
Cow position:
               
chr5:7193365-7193574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
198, 20
               

               
Conread position:
               
350-648
               

               
Cow position:
               
chr5:52001673-52001374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
192, 64
               

               
Conread position:
               
351-642
               

               
Cow position:
               
chr5:50101429-50101132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
121, 247
               

               
Conread position:
               
353-623
               

               
Cow position:
               
chr5:39447586-39447301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
353-625
               

               
Cow position:
               
chr5:71494770-71495039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
250, 207
               

               
Conread position:
               
354-531
               

               
Cow position:
               
chr5:33537819-33538001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
355-553
               

               
Cow position:
               
chr5:50533434-50533239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
45, 119
               

               
Conread position:
               
355-557
               

               
Cow position:
               
chr5:58446756-58446959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
356-531
               

               
Cow position:
               
chr5:48009895-48009732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
356-537
               

               
Cow position:
               
chr5:50821736-50821916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 48
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr5:57575723-57575909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
356-542
               

               
Cow position:
               
chr5:60747324-60747143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
356-547
               

               
Cow position:
               
chr5:5111121-5110926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
66, 47
               

               
Conread position:
               
356-551
               

               
Cow position:
               
chr5:56317251-56317436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
356-558
               

               
Cow position:
               
chr5:34300870-34301070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 104
               

               
Conread position:
               
356-559
               

               
Cow position:
               
chr5:30949962-30949758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
192, 9
               

               
Conread position:
               
356-590
               

               
Cow position:
               
chr5:15722112-15721892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
356-641
               

               
Cow position:
               
chr5:55176844-55177122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
356-642
               

               
Cow position:
               
chr5:16214638-16214924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
49, 236
               

               
Conread position:
               
356-644
               

               
Cow position:
               
chr5:33833998-33834286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 44
               

               
Conread position:
               
356-648
               

               
Cow position:
               
chr5:57265951-57265649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
356-649
               

               
Cow position:
               
chr5:35826557-35826847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
357-504
               

               
Cow position:
               
chr5:34638839-34638983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
357-522
               

               
Cow position:
               
chr5:58793654-58793489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
357-523
               

               
Cow position:
               
chr5:43408404-43408238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
152, 71
               

               
Conread position:
               
357-534
               

               
Cow position:
               
chr5:19813268-19813090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
357-537
               

               
Cow position:
               
chr5:1461042-1461222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
357-537
               

               
Cow position:
               
chr5:6286477-6286300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
357-538
               

               
Cow position:
               
chr5:7755607-7755437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
357-538
               

               
Cow position:
               
chr5:24136668-24136848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
357-540
               

               
Cow position:
               
chr5:51935147-51935325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
357-540
               

               
Cow position:
               
chr5:56680204-56680392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
357-540
               

               
Cow position:
               
chr5:62142629-62142812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
357-541
               

               
Cow position:
               
chr5:13717612-13717434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-542
               

               
Cow position:
               
chr5:8821060-8820875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
37, 109
               

               
Conread position:
               
357-542
               

               
Cow position:
               
chr5:14629858-14629667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
357-542
               

               
Cow position:
               
chr5:22643270-22643094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
357-542
               

               
Cow position:
               
chr5:56517057-56517242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
94, 113
               

               
Conread position:
               
357-542
               

               
Cow position:
               
chr5:68718824-68719005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
357-542
               

               
Cow position:
               
chr5:74015895-74016078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
357-545
               

               
Cow position:
               
chr5:45420179-45419996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
357-547
               

               
Cow position:
               
chr5:11769224-11769412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
74, 68
               

               
Conread position:
               
357-547
               

               
Cow position:
               
chr5:15426484-15426681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
357-547
               

               
Cow position:
               
chr5:55966924-55966740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
357-547
               

               
Cow position:
               
chr5:72564717-72564907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
357-548
               

               
Cow position:
               
chr5:20422233-20422050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-548
               

               
Cow position:
               
chr5:37808714-37808519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
357-548
               

               
Cow position:
               
chr5:47323420-47323606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
357-550
               

               
Cow position:
               
chr5:7697960-7698146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
143, 37
               

               
Conread position:
               
357-551
               

               
Cow position:
               
chr5:11229714-11229526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
144, 34
               

               
Conread position:
               
357-551
               

               
Cow position:
               
chr5:54086498-54086685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-551
               

               
Cow position:
               
chr5:54311290-54311483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
357-551
               

               
Cow position:
               
chr5:67212311-67212507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
33, 170
               

               
Conread position:
               
357-552
               

               
Cow position:
               
chr5:52000177-52000366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
357-553
               

               
Cow position:
               
chr5:458446-458637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
357-553
               

               
Cow position:
               
chr5:63987494-63987296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 119
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr5:4032037-4031836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr5:40241997-40242194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
34, 138
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr5:45273545-45273352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr5:49440919-49440726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
49, 167
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr5:53710735-53710539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr5:57156359-57156164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 74
               

               
Conread position:
               
357-556
               

               
Cow position:
               
chr5:37814577-37814778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
357-556
               

               
Cow position:
               
chr5:45574570-45574774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
357-556
               

               
Cow position:
               
chr5:57737059-57737249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr5:23678747-23678550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr5:29912372-29912574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr5:41545939-41545740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr5:44752364-44752154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr5:46509912-46509711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr5:58856059-58856255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
357-558
               

               
Cow position:
               
chr5:16206200-16206001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
129, 90
               

               
Conread position:
               
357-558
               

               
Cow position:
               
chr5:19523855-19524058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
357-558
               

               
Cow position:
               
chr5:64592141-64591941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-558
               

               
Cow position:
               
chr5:67118373-67118574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
357-559
               

               
Cow position:
               
chr5:54375552-54375347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
68, 44
               

               
Conread position:
               
357-571
               

               
Cow position:
               
chr5:62378746-62378948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
204, 30
               

               
Conread position:
               
357-577
               

               
Cow position:
               
chr5:30805123-30805339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
213, 21
               

               
Conread position:
               
357-582
               

               
Cow position:
               
chr5:56339065-56338847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
357-582
               

               
Cow position:
               
chr5:60183756-60183986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
357-591
               

               
Cow position:
               
chr5:54350408-54350176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
357-591
               

               
Cow position:
               
chr5:64523912-64523669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
357-595
               

               
Cow position:
               
chr5:37646591-37646354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 142
               

               
Conread position:
               
357-611
               

               
Cow position:
               
chr5:26097250-26097502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
188, 30
               

               
Conread position:
               
357-611
               

               
Cow position:
               
chr5:29353179-29352920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 169
               

               
Conread position:
               
357-613
               

               
Cow position:
               
chr5:45397527-45397779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
203, 34
               

               
Conread position:
               
357-614
               

               
Cow position:
               
chr5:17555077-17554820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
109, 13
               

               
Conread position:
               
357-619
               

               
Cow position:
               
chr5:16179570-16179303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
357-620
               

               
Cow position:
               
chr5:24349063-24349320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
357-622
               

               
Cow position:
               
chr5:54060232-54060494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
236, 46
               

               
Conread position:
               
357-623
               

               
Cow position:
               
chr5:40109446-40109708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 71
               

               
Conread position:
               
357-623
               

               
Cow position:
               
chr5:53835668-53835945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
357-624
               

               
Cow position:
               
chr5:19278745-19278478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
357-624
               

               
Cow position:
               
chr5:35763230-35763469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
213, 34
               

               
Conread position:
               
357-624
               

               
Cow position:
               
chr5:41713252-41713512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:7044752-7044480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
195, 242
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:12901872-12902145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:14550626-14550356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
203, 42
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:15470887-15471144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
213, 75
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:29903563-29903317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
213, 34
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:30629203-30628927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 8
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:33560778-33560512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
192, 34
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:43402855-43403135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
39, 250
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:47601774-47602034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
203, 33
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:52165223-52164947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
195, 46
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:56524124-56524388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
40, 199
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:63627570-63627314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
180, 21
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:70951921-70951666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
190, 34
               

               
Conread position:
               
357-625
               

               
Cow position:
               
chr5:74643716-74643458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 36
               

               
Conread position:
               
357-626
               

               
Cow position:
               
chr5:26990347-26990614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
82, 53
               

               
Conread position:
               
357-626
               

               
Cow position:
               
chr5:63192787-63192527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
213, 113
               

               
Conread position:
               
357-627
               

               
Cow position:
               
chr5:12434488-12434763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
28, 220
               

               
Conread position:
               
357-627
               

               
Cow position:
               
chr5:66366462-66366741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
49, 118
               

               
Conread position:
               
357-629
               

               
Cow position:
               
chr5:23529325-23529072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
357-629
               

               
Cow position:
               
chr5:55955862-55956142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
104, 43
               

               
Conread position:
               
357-629
               

               
Cow position:
               
chr5:66257593-66257866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
175, 48
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr5:5855818-5856091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
188, 17
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr5:24996268-24995989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 52
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr5:45845739-45845460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
41, 168
               

               
Conread position:
               
357-631
               

               
Cow position:
               
chr5:21617412-21617687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 28
               

               
Conread position:
               
357-631
               

               
Cow position:
               
chr5:26262721-26262453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
214, 102
               

               
Conread position:
               
357-631
               

               
Cow position:
               
chr5:59627019-59626740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 161
               

               
Conread position:
               
357-632
               

               
Cow position:
               
chr5:57101827-57101565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
43, 112
               

               
Conread position:
               
357-632
               

               
Cow position:
               
chr5:64321707-64321995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
357-632
               

               
Cow position:
               
chr5:66972383-66972663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
203, 43
               

               
Conread position:
               
357-633
               

               
Cow position:
               
chr5:28224409-28224676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
68, 49
               

               
Conread position:
               
357-634
               

               
Cow position:
               
chr5:35684891-35685168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
181, 111
               

               
Conread position:
               
357-634
               

               
Cow position:
               
chr5:44848065-44847791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
92, 42
               

               
Conread position:
               
357-635
               

               
Cow position:
               
chr5:19752260-19752537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr5:41165041-41165322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 237
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr5:42670908-42670636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr5:56070811-56071094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
357-636
               

               
Cow position:
               
chr5:60016122-60016400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
181, 37
               

               
Conread position:
               
357-638
               

               
Cow position:
               
chr5:34624912-34625187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
102, 191
               

               
Conread position:
               
357-639
               

               
Cow position:
               
chr5:12557337-12557048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 129
               

               
Conread position:
               
357-639
               

               
Cow position:
               
chr5:49474594-49474313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
7, 178
               

               
Conread position:
               
357-639
               

               
Cow position:
               
chr5:49685315-49685027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
144, 48
               

               
Conread position:
               
357-640
               

               
Cow position:
               
chr5:21828821-21829104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 45
               

               
Conread position:
               
357-640
               

               
Cow position:
               
chr5:56153569-56153840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 101
               

               
Conread position:
               
357-640
               

               
Cow position:
               
chr5:65752812-65753107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
43, 276
               

               
Conread position:
               
357-641
               

               
Cow position:
               
chr5:26467578-26467867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
357-641
               

               
Cow position:
               
chr5:63831882-63832159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
204, 43
               

               
Conread position:
               
357-642
               

               
Cow position:
               
chr5:29097322-29097606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
202, 30
               

               
Conread position:
               
357-642
               

               
Cow position:
               
chr5:35247157-35246861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
357-642
               

               
Cow position:
               
chr5:44796776-44796489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
184, 20
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr5:29828004-29828292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr5:30276652-30276931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 35
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr5:44446913-44446630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 205
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr5:46512808-46512524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
182, 36
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr5:50575740-50576012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
357-643
               

               
Cow position:
               
chr5:72951796-72952068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 183
               

               
Conread position:
               
357-644
               

               
Cow position:
               
chr5:6439078-6438777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
357-644
               

               
Cow position:
               
chr5:42845642-42845352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
357-645
               

               
Cow position:
               
chr5:22242821-22242529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
357-645
               

               
Cow position:
               
chr5:30302848-30303128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
357-645
               

               
Cow position:
               
chr5:36039051-36038761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 111
               

               
Conread position:
               
357-645
               

               
Cow position:
               
chr5:61455800-61456094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
357-646
               

               
Cow position:
               
chr5:15363835-15364117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
357-646
               

               
Cow position:
               
chr5:30092668-30092382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
357-646
               

               
Cow position:
               
chr5:41010042-41009761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
161, 41
               

               
Conread position:
               
357-646
               

               
Cow position:
               
chr5:45404996-45405295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
91, 46
               

               
Conread position:
               
357-646
               

               
Cow position:
               
chr5:62172369-62172646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
267, 43
               

               
Conread position:
               
357-647
               

               
Cow position:
               
chr5:4280403-4280689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
357-647
               

               
Cow position:
               
chr5:38833076-38833361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 99
               

               
Conread position:
               
357-648
               

               
Cow position:
               
chr5:57074378-57074089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
43, 7
               

               
Conread position:
               
357-649
               

               
Cow position:
               
chr5:66339034-66339320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
357-655
               

               
Cow position:
               
chr5:16893818-16893524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
357-684
               

               
Cow position:
               
chr5:51053695-51053361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
103, 42
               

               
Conread position:
               
358-484
               

               
Cow position:
               
chr5:50799490-50799614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
358-522
               

               
Cow position:
               
chr5:32696867-32696705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
358-537
               

               
Cow position:
               
chr5:63992217-63992039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
358-561
               

               
Cow position:
               
chr5:66551943-66551739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
358-588
               

               
Cow position:
               
chr5:60599238-60599021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
181, 33
               

               
Conread position:
               
358-590
               

               
Cow position:
               
chr5:72006537-72006301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
48, 205
               

               
Conread position:
               
358-640
               

               
Cow position:
               
chr5:34561968-34562249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
19, 217
               

               
Conread position:
               
358-640
               

               
Cow position:
               
chr5:44028349-44028068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
190, 104
               

               
Conread position:
               
359-521
               

               
Cow position:
               
chr5:31640377-31640542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
359-537
               

               
Cow position:
               
chr5:45804016-45804193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 28
               

               
Conread position:
               
359-548
               

               
Cow position:
               
chr5:6045248-6045440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
359-557
               

               
Cow position:
               
chr5:63234869-63234673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 45
               

               
Conread position:
               
359-572
               

               
Cow position:
               
chr5:63150211-63150001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
179, 32
               

               
Conread position:
               
359-590
               

               
Cow position:
               
chr5:69731460-69731683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 75
               

               
Conread position:
               
359-591
               

               
Cow position:
               
chr5:55796008-55795775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
113, 41
               

               
Conread position:
               
359-614
               

               
Cow position:
               
chr5:12673511-12673265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
201, 30
               

               
Conread position:
               
359-621
               

               
Cow position:
               
chr5:50943190-50942938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
35, 43
               

               
Conread position:
               
359-623
               

               
Cow position:
               
chr5:14314482-14314740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 186
               

               
Conread position:
               
359-623
               

               
Cow position:
               
chr5:30253698-30253964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 35
               

               
Conread position:
               
359-634
               

               
Cow position:
               
chr5:28035698-28035959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
359-636
               

               
Cow position:
               
chr5:42050504-42050781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
359-636
               

               
Cow position:
               
chr5:57935152-57934883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
359-637
               

               
Cow position:
               
chr5:74580746-74581029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 47
               

               
Conread position:
               
359-639
               

               
Cow position:
               
chr5:45472237-45472514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
120, 163
               

               
Conread position:
               
359-646
               

               
Cow position:
               
chr5:69461287-69461590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 143
               

               
Conread position:
               
359-660
               

               
Cow position:
               
chr5:16025504-16025221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
359-683
               

               
Cow position:
               
chr5:36855162-36855488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
360-531
               

               
Cow position:
               
chr5:26150463-26150294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
360-534
               

               
Cow position:
               
chr5:15598281-15598108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 133
               

               
Conread position:
               
360-535
               

               
Cow position:
               
chr5:64758813-64758636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
46, 65
               

               
Conread position:
               
360-536
               

               
Cow position:
               
chr5:40237171-40237343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
360-541
               

               
Cow position:
               
chr5:20783576-20783759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
120, 94
               

               
Conread position:
               
360-584
               

               
Cow position:
               
chr5:44994084-44993871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
360-625
               

               
Cow position:
               
chr5:17087064-17086791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
360-625
               

               
Cow position:
               
chr5:56548538-56548792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
189, 30
               

               
Conread position:
               
360-627
               

               
Cow position:
               
chr5:47696486-47696230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
360-633
               

               
Cow position:
               
chr5:65967776-65967503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 201
               

               
Conread position:
               
360-643
               

               
Cow position:
               
chr5:70270817-70271110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 246
               

               
Conread position:
               
360-647
               

               
Cow position:
               
chr5:69337781-69338063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 31
               

               
Conread position:
               
361-547
               

               
Cow position:
               
chr5:49342090-49341906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
361-551
               

               
Cow position:
               
chr5:43992281-43992471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
361-553
               

               
Cow position:
               
chr5:32339007-32338817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
361-564
               

               
Cow position:
               
chr5:17602242-17602046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
361-617
               

               
Cow position:
               
chr5:30845070-30845324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
361-632
               

               
Cow position:
               
chr5:61725925-61726190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
181, 42
               

               
Conread position:
               
362-543
               

               
Cow position:
               
chr5:68537707-68537529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
362-553
               

               
Cow position:
               
chr5:35982781-35982586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
362-580
               

               
Cow position:
               
chr5:66530877-66531099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
362-633
               

               
Cow position:
               
chr5:56877445-56877703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
117, 36
               

               
Conread position:
               
362-634
               

               
Cow position:
               
chr5:32394561-32394837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 5
               

               
Conread position:
               
362-636
               

               
Cow position:
               
chr5:31052345-31052625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
149, 32
               

               
Conread position:
               
362-639
               

               
Cow position:
               
chr5:57768021-57767748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
166, 29
               

               
Conread position:
               
362-640
               

               
Cow position:
               
chr5:50723009-50723289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
185, 23
               

               
Conread position:
               
362-642
               

               
Cow position:
               
chr5:35208224-35208507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
185, 36
               

               
Conread position:
               
362-642
               

               
Cow position:
               
chr5:56014689-56014964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 182
               

               
Conread position:
               
363-531
               

               
Cow position:
               
chr5:65588662-65588826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 66
               

               
Conread position:
               
363-537
               

               
Cow position:
               
chr5:61102675-61102849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
363-548
               

               
Cow position:
               
chr5:41294042-41294225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
45, 36
               

               
Conread position:
               
363-577
               

               
Cow position:
               
chr5:52083297-52083514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
58, 90
               

               
Conread position:
               
363-591
               

               
Cow position:
               
chr5:71724261-71724484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
363-593
               

               
Cow position:
               
chr5:43929777-43929547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
363-618
               

               
Cow position:
               
chr5:20779435-20779180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
180, 28
               

               
Conread position:
               
363-631
               

               
Cow position:
               
chr5:65941291-65941018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
363-632
               

               
Cow position:
               
chr5:3582526-3582788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
176, 28
               

               
Conread position:
               
363-633
               

               
Cow position:
               
chr5:65776421-65776143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
70, 29
               

               
Conread position:
               
363-634
               

               
Cow position:
               
chr5:20288303-20288023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 40
               

               
Conread position:
               
363-634
               

               
Cow position:
               
chr5:35976478-35976728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
363-636
               

               
Cow position:
               
chr5:57101565-57101290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 104
               

               
Conread position:
               
363-640
               

               
Cow position:
               
chr5:72895646-72895925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
196, 42
               

               
Conread position:
               
364-556
               

               
Cow position:
               
chr5:15479086-15479277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 36
               

               
Conread position:
               
365-537
               

               
Cow position:
               
chr5:60188953-60189126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
365-557
               

               
Cow position:
               
chr5:4166607-4166793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
365-557
               

               
Cow position:
               
chr5:57626757-57626944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
365-623
               

               
Cow position:
               
chr5:14920969-14920702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
365-629
               

               
Cow position:
               
chr5:22667040-22667300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
173, 29
               

               
Conread position:
               
367-616
               

               
Cow position:
               
chr5:53946861-53947116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
31, 36
               

               
Conread position:
               
367-621
               

               
Cow position:
               
chr5:51065496-51065737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
143, 31
               

               
Conread position:
               
367-633
               

               
Cow position:
               
chr5:9894161-9893891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
44, 236
               

               
Conread position:
               
367-633
               

               
Cow position:
               
chr5:22795178-22795440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 104
               

               
Conread position:
               
367-647
               

               
Cow position:
               
chr5:11668219-11667937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
166, 32
               

               
Conread position:
               
367-647
               

               
Cow position:
               
chr5:57686776-57686500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
29, 232
               

               
Conread position:
               
368-523
               

               
Cow position:
               
chr5:20407714-20407559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
368-557
               

               
Cow position:
               
chr5:26477053-26476865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
368-557
               

               
Cow position:
               
chr5:55019258-55019444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
368-639
               

               
Cow position:
               
chr5:30232871-30233150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
26, 142
               

               
Conread position:
               
368-654
               

               
Cow position:
               
chr5:60210178-60209891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
368-655
               

               
Cow position:
               
chr5:36838923-36839201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 157
               

               
Conread position:
               
369-636
               

               
Cow position:
               
chr5:8736323-8736039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
369-636
               

               
Cow position:
               
chr5:26549175-26548906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
371-554
               

               
Cow position:
               
chr5:67243888-67244068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
27, 33
               

               
Conread position:
               
371-643
               

               
Cow position:
               
chr5:12322838-12322567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
27, 99
               

               
Conread position:
               
373-629
               

               
Cow position:
               
chr5:48867490-48867240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
197, 10
               

               
Conread position:
               
374-554
               

               
Cow position:
               
chr5:56287529-56287352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
377-554
               

               
Cow position:
               
chr5:61875517-61875687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
377-557
               

               
Cow position:
               
chr5:57230365-57230184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
378-553
               

               
Cow position:
               
chr5:49501848-49501675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
379-557
               

               
Cow position:
               
chr5:58555111-58555290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
380-603
               

               
Cow position:
               
chr5:56334529-56334314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
191, 11
               

               
Conread position:
               
380-635
               

               
Cow position:
               
chr5:45187142-45186879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
383-634
               

               
Cow position:
               
chr5:64139537-64139798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
23, 183
               

               
Conread position:
               
383-635
               

               
Cow position:
               
chr5:20995113-20994851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
58, 187
               

               
Conread position:
               
385-534
               

               
Cow position:
               
chr5:45574381-45574235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
385-625
               

               
Cow position:
               
chr5:17104833-17105071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
385-641
               

               
Cow position:
               
chr5:33273675-33273941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 89
               

               
Conread position:
               
386-638
               

               
Cow position:
               
chr5:52137920-52138178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
387-653
               

               
Cow position:
               
chr5:36868721-36868993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
388-591
               

               
Cow position:
               
chr5:38168879-38169088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
128, 21
               

               
Conread position:
               
389-553
               

               
Cow position:
               
chr5:9234004-9233839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
389-639
               

               
Cow position:
               
chr5:12654926-12654668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 213
               

               
Conread position:
               
390-621
               

               
Cow position:
               
chr5:4267658-4267882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
179, 13
               

               
Conread position:
               
390-621
               

               
Cow position:
               
chr5:69383242-69383473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
170, 9
               

               
Conread position:
               
391-557
               

               
Cow position:
               
chr5:44054067-44053901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
391-623
               

               
Cow position:
               
chr5:64176139-64175906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
165, 205
               

               
Conread position:
               
391-625
               

               
Cow position:
               
chr5:51298726-51298489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
392-542
               

               
Cow position:
               
chr5:4710163-4710014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
392-554
               

               
Cow position:
               
chr5:39258496-39258656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
148, 77
               

               
Conread position:
               
392-613
               

               
Cow position:
               
chr5:38717299-38717509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
392-618
               

               
Cow position:
               
chr5:50600036-50600265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
5, 14
               

               
Conread position:
               
392-623
               

               
Cow position:
               
chr5:12761128-12760896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
393-621
               

               
Cow position:
               
chr5:60523722-60523949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
393-624
               

               
Cow position:
               
chr5:73253400-73253630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
393-632
               

               
Cow position:
               
chr5:39035769-39036015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
393-636
               

               
Cow position:
               
chr5:41403582-41403362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
393-639
               

               
Cow position:
               
chr5:56222554-56222295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 10
               

               
Conread position:
               
393-640
               

               
Cow position:
               
chr5:34915064-34914812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
394-625
               

               
Cow position:
               
chr5:46541065-46540834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
395-685
               

               
Cow position:
               
chr5:55232820-55232534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 72
               

               
Conread position:
               
396-639
               

               
Cow position:
               
chr5:17566444-17566203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
143, 7
               

               
Conread position:
               
397-639
               

               
Cow position:
               
chr5:16938029-16937791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
142, 97
               

               
Conread position:
               
398-651
               

               
Cow position:
               
chr5:64027025-64026757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
398-657
               

               
Cow position:
               
chr5:26253178-26252918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
158, 8
               

               
Conread position:
               
399-554
               

               
Cow position:
               
chr5:9170587-9170434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 88
               

               
Conread position:
               
400-542
               

               
Cow position:
               
chr5:44726338-44726196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
400-547
               

               
Cow position:
               
chr5:45126647-45126795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
400-632
               

               
Cow position:
               
chr5:5257292-5257054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
168, 210
               

               
Conread position:
               
400-647
               

               
Cow position:
               
chr5:11562727-11562477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
58, 196
               

               
Conread position:
               
400-647
               

               
Cow position:
               
chr5:50824586-50824831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
400-647
               

               
Cow position:
               
chr5:61914559-61914819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 208
               

               
Conread position:
               
402-557
               

               
Cow position:
               
chr5:51490249-51490094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
402-634
               

               
Cow position:
               
chr5:25495362-25495116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 209
               

               
Conread position:
               
402-635
               

               
Cow position:
               
chr5:25035256-25035018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
141, 34
               

               
Conread position:
               
402-646
               

               
Cow position:
               
chr5:35969531-35969787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
157, 45
               

               
Conread position:
               
402-647
               

               
Cow position:
               
chr5:52852969-52853216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
147, 194
               

               
Conread position:
               
403-553
               

               
Cow position:
               
chr5:33155814-33155964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
403-553
               

               
Cow position:
               
chr5:69636223-69636373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 22
               

               
Conread position:
               
403-554
               

               
Cow position:
               
chr5:24069389-24069537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
403-554
               

               
Cow position:
               
chr5:56428312-56428166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
403-557
               

               
Cow position:
               
chr5:55129342-55129496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
403-640
               

               
Cow position:
               
chr5:65679971-65679741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
157, 56
               

               
Conread position:
               
403-641
               

               
Cow position:
               
chr5:39937115-39937359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
149, 44
               

               
Conread position:
               
403-643
               

               
Cow position:
               
chr5:57489946-57489713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 22
               

               
Conread position:
               
403-662
               

               
Cow position:
               
chr5:6520010-6520268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 113
               

               
Conread position:
               
404-557
               

               
Cow position:
               
chr5:44874193-44874345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
404-620
               

               
Cow position:
               
chr5:72045674-72045456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
135, 65
               

               
Conread position:
               
404-621
               

               
Cow position:
               
chr5:44163369-44163151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
57, 194
               

               
Conread position:
               
404-623
               

               
Cow position:
               
chr5:53935547-53935330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
135, 33
               

               
Conread position:
               
404-647
               

               
Cow position:
               
chr5:61049332-61049581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
405-547
               

               
Cow position:
               
chr5:43457530-43457388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
81, 14
               

               
Conread position:
               
405-636
               

               
Cow position:
               
chr5:57062528-57062290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
131, 196
               

               
Conread position:
               
405-641
               

               
Cow position:
               
chr5:56028538-56028303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
142, 41
               

               
Conread position:
               
406-625
               

               
Cow position:
               
chr5:59627102-59627318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
407-647
               

               
Cow position:
               
chr5:60515025-60514774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 84
               

               
Conread position:
               
408-550
               

               
Cow position:
               
chr5:29771532-29771674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 21
               

               
Conread position:
               
408-570
               

               
Cow position:
               
chr5:17605130-17604964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
408-652
               

               
Cow position:
               
chr5:43858415-43858167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
152, 68
               

               
Conread position:
               
410-532
               

               
Cow position:
               
chr5:12169762-12169641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
410-647
               

               
Cow position:
               
chr5:7177157-7177399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
412-630
               

               
Cow position:
               
chr5:2240981-2240759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
148, 44
               

               
Conread position:
               
413-557
               

               
Cow position:
               
chr5:9369262-9369118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
413-625
               

               
Cow position:
               
chr5:60948142-60948358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
137, 57
               

               
Conread position:
               
413-631
               

               
Cow position:
               
chr5:5016438-5016656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
143, 46
               

               
Conread position:
               
414-621
               

               
Cow position:
               
chr5:75228188-75227991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
415-557
               

               
Cow position:
               
chr5:35647354-35647494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
416-613
               

               
Cow position:
               
chr5:46704287-46704083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
416-642
               

               
Cow position:
               
chr5:55942367-55942142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
194, 156
               

               
Conread position:
               
419-634
               

               
Cow position:
               
chr5:26147606-26147827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 207
               

               
Conread position:
               
420-557
               

               
Cow position:
               
chr5:5847829-5847693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
420-643
               

               
Cow position:
               
chr5:26167437-26167664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
119, 176
               

               
Conread position:
               
421-636
               

               
Cow position:
               
chr5:57497410-57497188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
20, 180
               

               
Conread position:
               
425-643
               

               
Cow position:
               
chr5:19079273-19079489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
144, 79
               

               
Conread position:
               
428-551
               

               
Cow position:
               
chr5:60596107-60595983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
428-558
               

               
Cow position:
               
chr5:55849909-55850034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
428-624
               

               
Cow position:
               
chr5:37842255-37842054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
109, 172
               

               
Conread position:
               
428-625
               

               
Cow position:
               
chr5:35190134-35190332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
123, 168
               

               
Conread position:
               
428-632
               

               
Cow position:
               
chr5:54312625-54312834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
112, 181
               

               
Conread position:
               
428-643
               

               
Cow position:
               
chr5:51289567-51289358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
136, 41
               

               
Conread position:
               
428-651
               

               
Cow position:
               
chr5:69766003-69765783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
112, 31
               

               
Conread position:
               
429-551
               

               
Cow position:
               
chr5:51490577-51490455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
430-625
               

               
Cow position:
               
chr5:34288224-34288028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
431-547
               

               
Cow position:
               
chr5:38647667-38647783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
431-647
               

               
Cow position:
               
chr5:49821455-49821679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
113, 172
               

               
Conread position:
               
432-548
               

               
Cow position:
               
chr5:29148919-29149032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
432-614
               

               
Cow position:
               
chr5:16668725-16668908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
125, 164
               

               
Conread position:
               
432-625
               

               
Cow position:
               
chr5:6086315-6086115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
24, 140
               

               
Conread position:
               
432-640
               

               
Cow position:
               
chr5:36822915-36823110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
433-641
               

               
Cow position:
               
chr5:1694059-1693851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
115, 133
               

               
Conread position:
               
434-536
               

               
Cow position:
               
chr5:35833439-35833541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
434-654
               

               
Cow position:
               
chr5:4864573-4864798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
131, 89
               

               
Conread position:
               
435-629
               

               
Cow position:
               
chr5:15991608-15991415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 87
               

               
Conread position:
               
438-634
               

               
Cow position:
               
chr5:62995991-62996194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 164
               

               
Conread position:
               
439-645
               

               
Cow position:
               
chr5:3817652-3817437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 161
               

               
Conread position:
               
441-617
               

               
Cow position:
               
chr5:51125972-51125796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
119, 103
               

               
Conread position:
               
441-642
               

               
Cow position:
               
chr5:40122573-40122364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 161
               

               
Conread position:
               
442-625
               

               
Cow position:
               
chr5:35394395-35394213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
128, 149
               

               
Conread position:
               
442-641
               

               
Cow position:
               
chr5:54127328-54127530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
97, 132
               

               
Conread position:
               
443-635
               

               
Cow position:
               
chr5:29599508-29599315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
15, 152
               

               
Conread position:
               
443-643
               

               
Cow position:
               
chr5:41984393-41984585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
22, 130
               

               
Conread position:
               
444-624
               

               
Cow position:
               
chr5:70591594-70591767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
126, 112
               

               
Conread position:
               
446-634
               

               
Cow position:
               
chr5:6876926-6876731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
447-554
               

               
Cow position:
               
chr5:1090776-1090672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
447-557
               

               
Cow position:
               
chr5:60126733-60126843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
448-625
               

               
Cow position:
               
chr5:73167967-73167787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 149
               

               
Conread position:
               
453-657
               

               
Cow position:
               
chr5:8136523-8136716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
454-650
               

               
Cow position:
               
chr5:67339934-67340133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
111, 12
               

               
Conread position:
               
455-655
               

               
Cow position:
               
chr5:60207759-60207962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
100, 82
               

               
Conread position:
               
456-636
               

               
Cow position:
               
chr5:37253481-37253660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
113, 135
               

               
Conread position:
               
456-642
               

               
Cow position:
               
chr5:34918398-34918585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 141
               

               
Conread position:
               
457-588
               

               
Cow position:
               
chr5:52192376-52192241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
457-623
               

               
Cow position:
               
chr5:60100523-60100686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
457-625
               

               
Cow position:
               
chr5:60153828-60153993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
457-625
               

               
Cow position:
               
chr5:70572424-70572584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
110, 24
               

               
Conread position:
               
457-636
               

               
Cow position:
               
chr5:49207274-49207093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
103, 141
               

               
Conread position:
               
457-638
               

               
Cow position:
               
chr5:29895224-29895411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
97, 143
               

               
Conread position:
               
461-557
               

               
Cow position:
               
chr5:48820786-48820882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
462-620
               

               
Cow position:
               
chr5:9559479-9559634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
108, 76
               

               
Conread position:
               
462-624
               

               
Cow position:
               
chr5:21520381-21520225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
462-625
               

               
Cow position:
               
chr5:21721412-21721250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
98, 137
               

               
Conread position:
               
462-633
               

               
Cow position:
               
chr5:52211629-52211456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
97, 133
               

               
Conread position:
               
462-643
               

               
Cow position:
               
chr5:19626636-19626820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
98, 136
               

               
Conread position:
               
462-643
               

               
Cow position:
               
chr5:58401627-58401809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
88, 134
               

               
Conread position:
               
463-569
               

               
Cow position:
               
chr5:27611717-27611614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
463-625
               

               
Cow position:
               
chr5:19968300-19968134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 137
               

               
Conread position:
               
463-631
               

               
Cow position:
               
chr5:46479183-46479015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 135
               

               
Conread position:
               
463-643
               

               
Cow position:
               
chr5:25462147-25462327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 132
               

               
Conread position:
               
464-625
               

               
Cow position:
               
chr5:34787634-34787798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 134
               

               
Conread position:
               
464-649
               

               
Cow position:
               
chr5:63300138-63300328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
71, 136
               

               
Conread position:
               
470-637
               

               
Cow position:
               
chr5:5030509-5030680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
470-640
               

               
Cow position:
               
chr5:6245597-6245426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
470-647
               

               
Cow position:
               
chr5:22957476-22957650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
101, 74
               

               
Conread position:
               
475-634
               

               
Cow position:
               
chr5:31234783-31234938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
92, 84
               

               
Conread position:
               
477-631
               

               
Cow position:
               
chr5:64061092-64061245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 117
               

               
Conread position:
               
480-630
               

               
Cow position:
               
chr5:17537597-17537449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 114
               

               
Conread position:
               
481-643
               

               
Cow position:
               
chr5:47335105-47335273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
57, 143
               

               
Conread position:
               
483-646
               

               
Cow position:
               
chr5:4728153-4728315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 112
               
Show alignments to all cow chromosomes.