Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002D01.3 |
| Conread position: | 374-639 |
| Cow position: | chr11:83086444-83086705 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 374-655 |
| Cow position: | chr11:3612337-3612606 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 193, 13 |
| Conread position: | 374-655 |
| Cow position: | chr11:71161944-71161664 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 193, 13 |
| Conread position: | 374-711 |
| Cow position: | chr11:32075513-32075855 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 390-657 |
| Cow position: | chr11:8237485-8237223 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 185, 13 |
| Conread position: | 392-668 |
| Cow position: | chr11:83266403-83266134 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 101, 29 |
| Conread position: | 395-655 |
| Cow position: | chr11:45820865-45821132 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 114, 26 |
| Conread position: | 395-668 |
| Cow position: | chr11:8557147-8557422 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 171, 28 |
| Conread position: | 404-667 |
| Cow position: | chr11:50040454-50040726 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 407-667 |
| Cow position: | chr11:64035063-64035329 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 409-647 |
| Cow position: | chr11:41226273-41226032 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 63, 223 |
| Conread position: | 419-721 |
| Cow position: | chr11:18139364-18139043 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 5, 159 |
| Conread position: | 421-622 |
| Cow position: | chr11:35745517-35745718 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 421-667 |
| Cow position: | chr11:32770407-32770655 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 52, 57 |
| Conread position: | 423-647 |
| Cow position: | chr11:48074041-48074271 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 21 |
| Conread position: | 423-721 |
| Cow position: | chr11:37328165-37328472 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 144, 164 |
| Conread position: | 427-663 |
| Cow position: | chr11:37318354-37318597 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 148, 140 |
| Conread position: | 428-667 |
| Cow position: | chr11:14191584-14191336 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 132, 200 |
| Conread position: | 428-667 |
| Cow position: | chr11:36397162-36397398 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 137, 23 |
| Conread position: | 432-655 |
| Cow position: | chr11:59969522-59969753 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 50, 134 |
| Conread position: | 432-667 |
| Cow position: | chr11:2895039-2894799 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 135, 36 |
| Conread position: | 433-667 |
| Cow position: | chr11:30473936-30474176 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 439-667 |
| Cow position: | chr11:85701662-85701894 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 451-608 |
| Cow position: | chr11:40582672-40582514 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 124, 8 |
| Conread position: | 451-665 |
| Cow position: | chr11:433152-433366 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 116, 65 |
| Conread position: | 452-667 |
| Cow position: | chr11:6752800-6753019 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 114, 99 |
| Conread position: | 452-667 |
| Cow position: | chr11:63667013-63667230 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 115, 33 |
| Conread position: | 459-667 |
| Cow position: | chr11:75129787-75129571 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 467-737 |
| Cow position: | chr11:58355597-58355874 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 72 |
| Conread position: | 471-667 |
| Cow position: | chr11:75202536-75202340 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 103, 11 |
| Conread position: | 485-650 |
| Cow position: | chr11:30220309-30220481 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 487-719 |
| Cow position: | chr11:45492433-45492669 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 80, 173 |
| Conread position: | 487-735 |
| Cow position: | chr11:14678035-14678301 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 500-667 |
| Cow position: | chr11:2068846-2069012 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 504-667 |
| Cow position: | chr11:52785851-52785682 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 519-682 |
| Cow position: | chr11:8306535-8306368 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 56, 48 |
Show alignments to all cow chromosomes.