Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002D01.3 |
| Conread position: | 365-639 |
| Cow position: | chr13:49710643-49710911 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 186, 9 |
| Conread position: | 366-667 |
| Cow position: | chr13:5245067-5244763 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 374-655 |
| Cow position: | chr13:14726681-14726399 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 193, 13 |
| Conread position: | 374-667 |
| Cow position: | chr13:2780914-2780625 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 232, 18 |
| Conread position: | 374-667 |
| Cow position: | chr13:13559707-13559426 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 374-667 |
| Cow position: | chr13:14863822-14863532 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 192, 13 |
| Conread position: | 374-667 |
| Cow position: | chr13:17121609-17121316 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 110, 12 |
| Conread position: | 392-666 |
| Cow position: | chr13:30325071-30324793 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 394-664 |
| Cow position: | chr13:34190014-34189742 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 400-667 |
| Cow position: | chr13:18860468-18860200 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 175, 21 |
| Conread position: | 402-655 |
| Cow position: | chr13:54346239-54345984 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 174, 19 |
| Conread position: | 409-625 |
| Cow position: | chr13:24633416-24633637 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 421-720 |
| Cow position: | chr13:56227233-56226928 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 130, 26 |
| Conread position: | 423-647 |
| Cow position: | chr13:52693557-52693333 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 144, 176 |
| Conread position: | 423-648 |
| Cow position: | chr13:52328944-52328715 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 426-653 |
| Cow position: | chr13:54409157-54409391 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 427-644 |
| Cow position: | chr13:52184056-52184281 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 142 |
| Conread position: | 427-647 |
| Cow position: | chr13:49625186-49624969 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 211, 139 |
| Conread position: | 427-667 |
| Cow position: | chr13:52852307-52852061 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 149, 139 |
| Conread position: | 427-743 |
| Cow position: | chr13:6063196-6063532 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 431-667 |
| Cow position: | chr13:5610396-5610639 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 432-663 |
| Cow position: | chr13:42101900-42101661 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 432-663 |
| Cow position: | chr13:49454239-49454472 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 432-666 |
| Cow position: | chr13:42124272-42124509 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 432-667 |
| Cow position: | chr13:13556956-13557194 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 180, 135 |
| Conread position: | 432-667 |
| Cow position: | chr13:50787332-50787092 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 135, 94 |
| Conread position: | 433-667 |
| Cow position: | chr13:15310411-15310647 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 88, 84 |
| Conread position: | 433-667 |
| Cow position: | chr13:36820275-36820515 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 51, 35 |
| Conread position: | 440-655 |
| Cow position: | chr13:4802669-4802449 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 151 |
| Conread position: | 445-662 |
| Cow position: | chr13:31483126-31483347 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 451-662 |
| Cow position: | chr13:41690845-41691056 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 155, 98 |
| Conread position: | 456-622 |
| Cow position: | chr13:43783930-43784101 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 119, 111 |
| Conread position: | 456-667 |
| Cow position: | chr13:26005101-26005318 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 457-668 |
| Cow position: | chr13:14574533-14574316 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 468-667 |
| Cow position: | chr13:14917749-14917544 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 99 |
| Conread position: | 471-735 |
| Cow position: | chr13:22108284-22108568 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 104, 96 |
| Conread position: | 471-735 |
| Cow position: | chr13:22169016-22169295 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 84 |
| Conread position: | 480-667 |
| Cow position: | chr13:55380432-55380622 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 87, 21 |
| Conread position: | 483-667 |
| Cow position: | chr13:13800076-13800265 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 84 |
| Conread position: | 487-667 |
| Cow position: | chr13:26935033-26935215 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 101 |
| Conread position: | 488-667 |
| Cow position: | chr13:50117354-50117539 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 503-721 |
| Cow position: | chr13:5249552-5249316 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 57, 65 |
Show alignments to all cow chromosomes.