Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002D01.3 |
| Conread position: | 374-610 |
| Cow position: | chr16:39021035-39021266 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 192, 13 |
| Conread position: | 374-655 |
| Cow position: | chr16:53198530-53198247 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 374-663 |
| Cow position: | chr16:31531045-31531331 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 201, 13 |
| Conread position: | 390-623 |
| Cow position: | chr16:48890004-48889764 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 179 |
| Conread position: | 392-610 |
| Cow position: | chr16:29661298-29661516 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 175, 17 |
| Conread position: | 392-667 |
| Cow position: | chr16:16599817-16600090 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 393-667 |
| Cow position: | chr16:24173811-24173533 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 134, 28 |
| Conread position: | 400-653 |
| Cow position: | chr16:23948042-23948294 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 402-668 |
| Cow position: | chr16:37225731-37225464 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 165, 19 |
| Conread position: | 423-641 |
| Cow position: | chr16:4614432-4614655 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 144 |
| Conread position: | 424-644 |
| Cow position: | chr16:17749552-17749335 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 151, 99 |
| Conread position: | 426-616 |
| Cow position: | chr16:30655026-30655214 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 132, 27 |
| Conread position: | 426-665 |
| Cow position: | chr16:56078717-56078957 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 426-667 |
| Cow position: | chr16:15669195-15668952 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 427-602 |
| Cow position: | chr16:31133209-31133385 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 427-655 |
| Cow position: | chr16:2249844-2250077 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 427-667 |
| Cow position: | chr16:27275137-27274896 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 181, 123 |
| Conread position: | 428-662 |
| Cow position: | chr16:40516630-40516398 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 181, 16 |
| Conread position: | 432-610 |
| Cow position: | chr16:52775608-52775431 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 432-655 |
| Cow position: | chr16:4396507-4396742 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 433-634 |
| Cow position: | chr16:56975782-56975577 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 142, 97 |
| Conread position: | 433-667 |
| Cow position: | chr16:47871510-47871269 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 434-664 |
| Cow position: | chr16:34613847-34614077 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 434-667 |
| Cow position: | chr16:54014692-54014927 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 8, 134 |
| Conread position: | 440-667 |
| Cow position: | chr16:47742979-47743215 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 440-668 |
| Cow position: | chr16:33644384-33644149 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 451-663 |
| Cow position: | chr16:21558081-21558300 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 123, 116 |
| Conread position: | 451-667 |
| Cow position: | chr16:15433803-15434025 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 451-667 |
| Cow position: | chr16:18054470-18054692 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 124, 114 |
| Conread position: | 467-657 |
| Cow position: | chr16:21979976-21979779 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 487-638 |
| Cow position: | chr16:40122049-40122205 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 89, 80 |
| Conread position: | 487-657 |
| Cow position: | chr16:2522266-2522439 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 53 |
| Conread position: | 514-662 |
| Cow position: | chr16:12114077-12114229 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 39 |
| Conread position: | 514-681 |
| Cow position: | chr16:9954958-9955127 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 515-667 |
| Cow position: | chr16:49979105-49979263 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 60, 52 |
Show alignments to all cow chromosomes.