Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8002D01.3 |
| Conread position: | 374-651 |
| Cow position: | chr5:59045168-59044893 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 193, 13 |
| Conread position: | 374-663 |
| Cow position: | chr5:34024749-34025038 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 201, 13 |
| Conread position: | 374-663 |
| Cow position: | chr5:47459812-47460098 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 374-667 |
| Cow position: | chr5:39323191-39323484 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 374-667 |
| Cow position: | chr5:47768057-47767764 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 192, 13 |
| Conread position: | 374-667 |
| Cow position: | chr5:47838236-47837938 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 89, 13 |
| Conread position: | 398-610 |
| Cow position: | chr5:59053599-59053390 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 169, 14 |
| Conread position: | 399-665 |
| Cow position: | chr5:6390965-6390694 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 399-667 |
| Cow position: | chr5:59117723-59117993 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 402-624 |
| Cow position: | chr5:57628639-57628855 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 163, 19 |
| Conread position: | 419-626 |
| Cow position: | chr5:63078514-63078309 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 183, 21 |
| Conread position: | 421-644 |
| Cow position: | chr5:43087403-43087176 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 154, 50 |
| Conread position: | 421-667 |
| Cow position: | chr5:3396786-3396533 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 148 |
| Conread position: | 423-644 |
| Cow position: | chr5:60922424-60922198 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 144, 53 |
| Conread position: | 423-663 |
| Cow position: | chr5:2188517-2188761 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 21 |
| Conread position: | 426-666 |
| Cow position: | chr5:45196385-45196629 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 186, 21 |
| Conread position: | 427-667 |
| Cow position: | chr5:49609838-49610082 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 107, 162 |
| Conread position: | 432-668 |
| Cow position: | chr5:31249254-31249493 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 432-668 |
| Cow position: | chr5:63793850-63793616 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 143, 37 |
| Conread position: | 434-626 |
| Cow position: | chr5:56269393-56269590 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 141, 133 |
| Conread position: | 456-666 |
| Cow position: | chr5:63252453-63252233 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 487-667 |
| Cow position: | chr5:45710144-45710326 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 89, 80 |
| Conread position: | 487-667 |
| Cow position: | chr5:60041802-60041616 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 494-667 |
| Cow position: | chr5:31486848-31486670 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 506-667 |
| Cow position: | chr5:64185249-64185411 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 61 |
| Conread position: | 514-667 |
| Cow position: | chr5:43401285-43401131 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 46 |
Show alignments to all cow chromosomes.